BAC Information

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BAC

Clone NameMSMg01-346I08
Chromosome15 (Build37)
Map Location 61,551,460 - 61,716,672
singlet/doubletdoublet
Overlap genenone
Upstream geneEG632412, LOC100040311, D330050I23Rik, 9930014A18Rik, A1bg, LOC100040323
Downstream geneMyc, Pvt1, LOC100040584, H2afy3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346I08.T7 (MSMg01no346_i08.b1)MSMg01-346I08.TJ (MSMg01no346_i08.g1)
ACCAG459086AG459087
length761764
length of high quality
(start - end)
444 (38 - 481)247 (68 - 314)
definitionCHROMAT_FILE: MSMg01no346_i08.b1 PHD_FILE: MSMg01no346_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:14 2005CHROMAT_FILE: MSMg01no346_i08.g1 PHD_FILE: MSMg01no346_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,551,460 - 61,551,900)(61,716,426 - 61,716,672)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTG
GAATTTTTAAATGAACAAGTATAAGAAAATATTCAAAATTCTTTTTGAAC
ATGAGAAAACTGAGATTTCTGGAGGTCAACCGTCCCATTAGGGGTGACAC
AGTTAGCAACAGATGATAAGGAAGGATTAGGCATGGAAGCAAAACTGACA
AGCCATACACAAGAAAGATTAACAGAAGGCGATAGTTGGGACTAATGAAA
AGAACAATTGGAAAAAGTAGTAAACCCACGAAAGTTTTCAAAAGAACACT
GAAGATGCACAGGGTTTTGGAATTGCCACAGGAGACAATGAAGCTACAGT
GTGCTCATTAGTAGGAAAATAAAACTTAGAGTCAAAACTGGAGCTGTCTC
TAACCATACTCCCAACTTGATATCATCTTTCCCAAGTCTGACTCCCCGAG
TGTGTTCTTGACACCGCATTACAATTGCTGGCACCACTTCTCTACCAGAC
TGGGCGGTTCAGAACATAAACTATGTCATTTCAATCTCTAAAATCTCTTG
TGACTTGTCACAAAATTGGGTCCAAAGGGTCCCAGTTTTTTTTGGAAAGA
AAATTACTAACTTCCTAACTAAAAATCTTGCGGGAAAGTGTGTTCCCCAA
CTACTATTTCTTTGTGAGGTGGAGGCTACCCATCCCCCCTAATTGTGTTT
GTGTTTCTCCGAGATCATTTATTTTTTAGCTCCTTTCTTGCTTATATATA
TTGGGGACCCC
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAATCAGCACCTGGAGATGAATAAAGAGTGGGAG
GGGTTTTACAGAATACACAAGTGAATGGGTTGCAAATTGATCAGGTAGGG
TCAACTAGGGACAAGAGAAATAGGGAGATGTGCACAGGGTATACTCACAA
TGAAGTAATTGACCCAGCTGGACAAGAAAGCAGGGCATGAAGAAGATAGG
AGCAGGTGTCACACTAGAGTTCCCTTGGGGGTTGATTTTGAAGAGCTTTG
GATGCCGCCATCATTATATGCTCAGGACCTTTAAGTGGCTGAGTTAGCAG
TGAGAGAGGCACTGAAAGAGACCTGCTTTTCCAAGATGAGGATTGTAATT
GGTTATTGATGCCCTATTTGTATGCTAATGCTGCTTCACAAAACAGTTAA
ACCATAATTAACGTTCCAGCTTCCTTTCCCGAAAGAAAATTTTAGATAGA
CGCCCACATAAAGGTTACTCTATTTCCTATAGTATATTACTCAACAATGG
CAAACTCACGAATTCCATTTCGGACCTTCCTTCTCTTCCTGTTTTCACAT
ATTATTATTCGGTACTTGCGTCCTACCGAATTTCGTTTTCCCCTTTGGGC
TTATTCTTTTATACTTCCGTACCCCATTGGATCTATTCCCTCTTCGTTTA
TGTGCCCACATTCCTTTTTTTCCTTTCCTTATCCACCTGCTTTTTTCTCC
CCTGCGTCCTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_i08.b1 MSMg01no346_i08.b1 CHROMAT_FILE:
MSMg01no346_i08.b1 PHD_FILE: MSMg01no346_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:14 2005
         (444 letters)



>mm_chr15_61551257_61552100
          Length = 844

 Score =  806 bits (417), Expect = 0.0
 Identities = 435/441 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttggaatttttaaatgaacaagtataagaaaatattcaaaattctttttgaac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttggaatttttaaatgaacaagtataagaaaatattcaaaattctttttgaac 263

                                                                       
Query: 64  atgagaaaactgagatttctggaggtcaaccgtcccattaggggtgacacagttagcaac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atgagaaaactgagatttctggaggtcaaccgtcccattaggggtgacacagttagcaac 323

                                                                       
Query: 124 agatgataaggaaggattaggcatggaagcaaaactgacaagccatacacaagaaagatt 183
           ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 324 agatgataaggaaagattaggcatggaagcaaaactgacaagtcatacacaagaaagatt 383

                                                                       
Query: 184 aacagaaggcgatagttgggactaatgaaaagaacaattggaaaaagtagtaaacccacg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aacagaaggcgatagttgggactaatgaaaagaacaattggaaaaagtagtaaacccacg 443

                                                                       
Query: 244 aaagttttcaaaagaacactgaagatgcacagggttttggaattgccacaggagacaatg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaagttttcaaaagaacactgaagatgcacagggttttggaattgccacaggagacaatg 503

                                                                       
Query: 304 aagctacagtgtgctcattagtaggaaaataaaacttagagtcaaaactggagctgtctc 363
           |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aagctacaatgggctcattagtaggaaaataaaacttagagtcaaaactggagctgtctc 563

                                                                       
Query: 364 taaccatactcccaacttgatatcatctttcccaagtctgactccccgagtgtgttcttg 423
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taaccatactcccaatttgatatcatctttcccaagtctgactccccgagtgtgttcttg 623

                                
Query: 424 acaccgcattacaattgctgg 444
           ||||||||||| |||||||||
Sbjct: 624 acaccgcattagaattgctgg 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no346_i08.g1 MSMg01no346_i08.g1 CHROMAT_FILE:
MSMg01no346_i08.g1 PHD_FILE: MSMg01no346_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:14 2005
         (247 letters)



>mm_chr15_61716226_61716872
          Length = 647

 Score =  470 bits (243), Expect = e-137
 Identities = 246/247 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatcagcacctggagatgaataaagagtgggaggggttttacagaatacacaagtgaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aatcagcacctggagatgaataaagagtgggaggggttttacagaatacacaagtgaatg 388

                                                                       
Query: 61  ggttgcaaattgatcaggtagggtcaactagggacaagagaaatagggagatgtgcacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ggttgcaaattgatcaggtagggtcaactagggacaagagaaatagggagatgtgcacag 328

                                                                       
Query: 121 ggtatactcacaatgaagtaattgacccagctggacaagaaagcagggcatgaagaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ggtatactcacaatgaagtaattgacccagctggacaagaaagcagggcatgaagaagat 268

                                                                       
Query: 181 aggagcaggtgtcacactagagttcccttgggggttgattttgaagagctttggatgccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 267 aggagcaggtgtcacactagagttcccttgggggttgattttgaagagctttggacgccg 208

                  
Query: 241 ccatcat 247
           |||||||
Sbjct: 207 ccatcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)