Query= MSMg01no346_j05.b1 MSMg01no346_j05.b1 CHROMAT_FILE:
MSMg01no346_j05.b1 PHD_FILE: MSMg01no346_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:18 2005
(508 letters)
>mm_chr15_27518513_27519424
Length = 912
Score = 926 bits (479), Expect = 0.0
Identities = 500/509 (98%), Gaps = 4/509 (0%)
Strand = Plus / Minus
Query: 4 ggaattcctgaaagtcttgggctcccaaagaagctgcctaagcagtaagagtcatacaag 63
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 712 ggaattcctgaaagtcttgggctcccaaagaagccgcctaagcagtaagagtcatacaag 653
Query: 64 tgacagagctcagacagattagctgtgctaatgttcacagctctacttataaacgtgaat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tgacagagctcagacagattagctgtgctaatgttcacagctctacttataaacgtgaat 593
Query: 124 acacaatcagtggtccccagacttccacaacagctttaaggtcgaaacaaaaggaactaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 acacaatcagtggtccccagacttccacaacagctttaaggtcgaaacaaaaggaactaa 533
Query: 184 agacaatgcagaaagaaggaaaaataaaaaccctttctatcatgctgacattctcagatg 243
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 532 agacaatgcagaaagaaggaaaaataaaaaacctttctatcatgctgacattctcagatg 473
Query: 244 ggtgaagaaactgtattcatggatcaggaacagaatagaaatgttctagagacatgcatg 303
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ggcgaagaaactgtattcatggatcaggaacagaatagaaatgttctagagacatgcatg 413
Query: 304 gaaca----cgagcgagccaggggttaggaggatgaagctacatctgagaaagacattgg 359
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gaacacgagcgagcgagccaggggttaggaggatgaagctacatctgagaaagacattgg 353
Query: 360 ctgacacggagtcagaagtcagccacaggacagagctgacaacgatacaatgagactaga 419
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 352 ctgacacggagtcagaagtcagccacaggacagagctgacaacgatagagtgagactaga 293
Query: 420 tcgtttttcttttgatcaaataaatctaatattctgatactaacagttccaaaaagaggg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tcgtttttcttttgatcaaataaatctaatattctgatactaacagttccaaaaagaggg 233
Query: 480 aacagtgaccctttcagagctgaaagagg 508
|||||||||||||||||||||||||||||
Sbjct: 232 aacagtgaccctttcagagctgaaagagg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 912
Length adjustment: 10
Effective length of query: 498
Effective length of database: 902
Effective search space: 449196
Effective search space used: 449196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_j05.g1 MSMg01no346_j05.g1 CHROMAT_FILE:
MSMg01no346_j05.g1 PHD_FILE: MSMg01no346_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:18 2005
(446 letters)
>mm_chr15_27373414_27374259
Length = 846
Score = 746 bits (386), Expect = 0.0
Identities = 428/454 (94%), Gaps = 22/454 (4%)
Strand = Plus / Plus
Query: 1 tgcatatatgtaccctcagacacacatatgtacacataaaataaggagatttaaaaaaaa 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tgcatatatgtaccctcagacacacatatgtacacataaaataaagagatttaaaaaaaa 260
Query: 61 aataagaggaagagtgataaagggagacactcaaaagtccacttctgaccttcacatgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataagaggaagagtgataaagggagacactcaaaagtccacttctgaccttcacatgtg 320
Query: 121 ctcatgcacacacacac----tcacacacaccacacacacatatacactcacacaccaca 176
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 ctcatgcacacacacacacactcacacacaccacacacacatacacactcacacaccaca 380
Query: 177 catacacacactcacacacaccacacacacacaca--tacacactcatacataccacata 234
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 catacacacactcacacacaccacacacacacacacatacacactcatacataccacata 440
Query: 235 catagacatacatgtaccacacacaca------ctcacacaccacacatacacactcaaa 288
||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 catagacatacatgtaccacacacacatacacactcacacaccacacatacacactcaaa 500
Query: 289 ccacacacacacacacacacacacacacacacacacacgaatggtcaaagctaagcatgg 348
|||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 501 ccacacacacacacacacacacacacac----------gaatggtcaaagctgagcatgg 550
Query: 349 aagctcactcctataatttcagcatacagaaaggtgaggcaggaggtttgccatgaattc 408
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aagctcactcctaaaatttcagcatacagaaaggtgaggcaggaggtttgccatgaattc 610
Query: 409 aaagccagcctgggctatacagtgagtcccaggt 442
||||||||||||||||||||||||||||||||||
Sbjct: 611 aaagccagcctgggctatacagtgagtcccaggt 644
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space: 364496
Effective search space used: 364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
