BAC Information

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BAC

Clone NameMSMg01-350C12
Chromosome15 (Build37)
Map Location 26,617,257 - 26,617,520
singlet/doubletsinglet
Overlap geneFbxl7
Upstream geneMyo10, Ppia-ps15_175.1, 1810015C04Rik, Zfp622, AK162044
Downstream geneLOC622531, LOC625311, Ank, BC087945, LOC100040622, BC052328
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350C12.T7 (MSMg01no350_c12.b1)MSMg01-350C12.TJ (MSMg01no350_c12.g1)
ACCAG461836AG461837
length782763
length of high quality
(start - end)
252 (74 - 325)288 (82 - 369)
definitionCHROMAT_FILE: MSMg01no350_c12.b1 PHD_FILE: MSMg01no350_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:00 2005CHROMAT_FILE: MSMg01no350_c12.g1 PHD_FILE: MSMg01no350_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAAAAATTTCACGAACTTGGAGGCAGGAGTTGATACAGAGG
CCACGGAGGAGTGATGCTTACTGAATGGTTTTTTTTTGTTGTTTTTGTTT
TGTTTTGTTTTGTTTTGTTTTGTTGTCGTTGTCGTTGTTGTTGTTTCTTT
GAGACAGGGTTTCTCTGTATTGCCCTGGCTGTCCTGGAACTCACTCGGTA
GACCATGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTTCCTCCCAAGT
TCTGGGATTAAAGGCATGTGCCATCTCTTTTGCCCGGCCTGAATGGCTTT
TTATGTCCTGATTTTCTATATACCACAGGACTACCTTTCCAGGGTGTCAC
CATCCCTGGTAAGATCCACCCTCCTATATCAATCACCAATTGAGAAAATT
TACTACAGGATTTCCCATTGGCCAATCTGGTGGGAACATTTTCTCAATTC
AGAGGTATTTTTGGCTTTTGTTTGCTTGCTTTGTTTTGCTTTGTCCTGCC
GTAATCATCCTTATTTTTAATAAAATAATTCTAGCTTGTGTCCTACTTGA
CCCAAATCTAATTCCTACAGTAAAATATTCCTAATGTCATAACAAAAAAC
TTTTTATTAAACCTCTTCTTCTCTTCTATTTTCTCCCGCCTTTTGAACAT
CCCCCTAAAAATTTCCCTACAAATCGGTCCATAATTTCACCATAATACGT
TTGATAAATACCTTTTTTTTTTTCTTCCAACT
TTTTCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGAGTGTTTCACGAGTG
CTTTCCAAGTCAAGAGCCCTGCCCTGGCAGGGCTGAGTGTGGAGAGAGGA
CTCAATCTAACTGTCCTTAAGCAATCTCGTGTCAGCAAGTAAGGCAGGCA
GGTTCCAGAATCTGGTGTTTCAGATAAGACACAATATGTTAGAATGGGTG
TGGCAAGTTTGGACGCCGTGGAATCATTGGAAGGTGTAGGCAATTAGTGA
GTTAGTTAAAACATTTTGTTATATATATATATATATATATATATATATAT
ATATATATATATATATATATATACGCGCACTCATACATGTACGGATACAT
TTCTCCTTATATGGAGGGGGGTACGCAAGTACGATATGCACAGACACATA
GAGTGTGTGTTATAACAATAAACATAGAGCCTTTTGCGTGTGTTTCTCTT
ACGCGCGAGAGCGCTTTTACACACATAGAGAGATACCCTTCACCTCACTC
CCACCGGCGTGTGGCGGTCGTCTCCTTTTTCCTCTCTTCCTCCAACCCTC
CTTATCCCGGTTCCTTCTTCTTTTCCTGTTATCTTCCTTCTGTGTGCTGG
GGCGTCCGGGCTCTCCCCTTGTTCTTTTGTTTGTTCTTCTTTCCTCTATA
TTTTTTTTTTCTCTTATCTTTTCCTTTCCTATTTTCTCTCTCTTTTTTCT
CCTTCCCTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_c12.g1 MSMg01no350_c12.g1 CHROMAT_FILE:
MSMg01no350_c12.g1 PHD_FILE: MSMg01no350_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:00 2005
         (288 letters)



>mm_chr15_26617083_26617770
          Length = 688

 Score =  495 bits (256), Expect = e-144
 Identities = 262/264 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgagtgtttcacgagtgctttccaagtcaagagccctgccctggcagggctgagtgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aatgagtgtttcacgagtgctttccaagtcaagagccctgccctggcagggctgagtgtg 379

                                                                       
Query: 61  gagagaggactcaatctaactgtccttaagcaatctcgtgtcagcaagtaaggcaggcag 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 378 gagagaggactcaatctaactgtccttaagcaacctcgtgtcagcaagtaaggcaggcag 319

                                                                       
Query: 121 gttccagaatctggtgtttcagataagacacaatatgttagaatgggtgtggcaagtttg 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 318 gttccagaatctggtgtttcagataagacacaatatgctagaatgggtgtggcaagtttg 259

                                                                       
Query: 181 gacgccgtggaatcattggaaggtgtaggcaattagtgagttagttaaaacattttgtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gacgccgtggaatcattggaaggtgtaggcaattagtgagttagttaaaacattttgtta 199

                                   
Query: 241 tatatatatatatatatatatata 264
           ||||||||||||||||||||||||
Sbjct: 198 tatatatatatatatatatatata 175


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 138
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)