BAC Information

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BAC

Clone NameMSMg01-350D20
Chromosome15 (Build37)
Map Location 91,514,248 - 91,567,714
singlet/doubletdoublet
Overlap geneLrrk2
Upstream geneLOC100042462, LOC100042471, EG667682, Tcea1-ps1, Spn-ps, Kif21a, EG635871, Abcd2, LOC545126, Slc2a13
Downstream geneMuc19, Smgc, LOC100042529, Cntn1, Pdzrn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350D20.T7 (MSMg01no350_d20.b1)MSMg01-350D20.TJ (MSMg01no350_d20.g1)
ACCAG461899AG461900
length784786
length of high quality
(start - end)		469 (48 - 516)417 (79 - 495)
definitionCHROMAT_FILE: MSMg01no350_d20.b1 PHD_FILE: MSMg01no350_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:06 2005CHROMAT_FILE: MSMg01no350_d20.g1 PHD_FILE: MSMg01no350_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,514,248 - 91,514,709)(91,567,298 - 91,567,714)
sequence
NNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGTGTGCATAGCTGCAAAAGCCTGAGAAGGCTCAAGGGAGGCT
GCACAGGGCGGTGGGAGACACTCATGTACTAATTGTCCCTGCTAATGAAG
ACCTTCAGGAGAGAAAAGCAGTAAGAAAGAGTGTAAGACCCAGGGCACAG
AGGACAGGAAACAGGAGACTCCCAAAGAGCATTTAATTCAATGATTTAAT
GGCATGTAGTTGCAACTCTCATCCTTGGGACTGTCACCGTTTTCCTTGGT
TCATTTCTCTTTTGTCACAATCGAGCCCTCACTCCAGTGGCCCTTCCGCT
ATGGTGCAAATGTTGCTACCCATTGTCACAACAAGCAGCTCTATGTGACT
CTTAGGATTTTGAAATATGATGAAAAGCTGGACTTTGATTTTATTTAAGT
TTTTATGGATTTAAATTTGAATCTAAATAGACACATGGTGGCAAGGGAAT
GGCGCTGCTCATGCATATGGGCTAATGCCTTTAAAGAGATAATTGAAGTT
TAAAAGTACTGTACTACAAATAGAATGATACTCACCCCAAAGGGATAGCA
GTCAAAGTCCCCAGGTGGGAGTTGCAAATGTTTGTGAAATGTGTAAAGTT
TTTTGTCTGCGCAATTTTTTAAAAAGGGTCTTTTTTCTCACGACAAACCG
GGAATTTATATTTTTTCTGGGGCCCCCCCTTGTTATAAATTCCCCTTTTT
TTCTCCTGCCCCCTATACTCCCCCGGGGGGGTTG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGTGAAGTTCCAGTTTGGTGA
GATGCTCCAGGTGGCTACTGAGGCAACACTTCTGGCTCAGAGCATCAATA
TCTTTGAGTTCGTTGGCAGATAGGTCTAACGACGTGATGTGTTCTCTCTC
AGAAGCCAGGGAAGAAGAGCTATCTGATTGCCTCATATGGGACGGCAGCC
TTGAGGACCCTTTTTTCCCCCGAAACAAAAGATGGAAATGTAAGTGTGCA
CAGTTGAATGAAACTGTGAAAATGGACTGAGCCCTCTTCACCTCAGGAGG
CAGGCTCGGCAAGAACACCAAACTGGGGCGCGCGCCCTCTAGTGGTTAGA
ATGCAGAGCAAATAAAAGTAACTCGTGGTGTGAAAGCTGAACTACAAATG
AAAATAAAAAATAGGGGTGGGGAAACCATAATTTGGATTTCAGAAAAATC
ACAAAAATGCGAGTCTGATAACAGTCATACAAATTAAATCTTAATAGCCT
CTTTGATCATTAGATGAATACCTTTATATGAAAGCATTGTAGTTCTAATA
GGCCAGATTTTTTTAATTTAGGAATCCAAGGAGGGTTAACCAAACCCCAG
ATTTCGCCCCGGATTTTTTTGGAATTAAATTCGTTCCCCCCTCTTTCTAA
AGAACCCCTTGTCGAAAGGATTTTTTTTTTTTTTCTCCCAAAAGCTTCTC
GGGTGAAAAAAGAGACCTTTTTTTATAAATACCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_d20.b1 MSMg01no350_d20.b1 CHROMAT_FILE:
MSMg01no350_d20.b1 PHD_FILE: MSMg01no350_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:06 2005
         (469 letters)



>mm_chr15_91514042_91514910
          Length = 869

 Score =  808 bits (418), Expect = 0.0
 Identities = 451/462 (97%)
 Strand = Plus / Plus

                                                                       
Query: 7   attctgtgtgcatagctgcaaaagcctgagaaggctcaagggaggctgcacagggcggtg 66
           |||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 207 attctgtgtgcagagctgcaaaagcctgagaaggcacaagggaggctgcacaggggggtg 266

                                                                       
Query: 67  ggagacactcatgtactaattgtccctgctaatgaagaccttcaggagagaaaagcagta 126
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 267 ggagacactcatgtactaattgttcctgctaatgaagaccttcaggagagaaaagcagta 326

                                                                       
Query: 127 agaaagagtgtaagacccagggcacagaggacaggaaacaggagactcccaaagagcatt 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 327 agaaagagtgtaagacccagggcacagaggacaggaaacaggagactcccaaagagtgtt 386

                                                                       
Query: 187 taattcaatgatttaatggcatgtagttgcaactctcatccttgggactgtcaccgtttt 246
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 387 taattcaatgatttaatggcatgtagttgcaactctcatccttgggactgtcacagtttt 446

                                                                       
Query: 247 ccttggttcatttctcttttgtcacaatcgagccctcactccagtggcccttccgctatg 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ccttggttcatttctcttttgtcacaatcgagccctcactccagtggcccttccgctatg 506

                                                                       
Query: 307 gtgcaaatgttgctacccattgtcacaacaagcagctctatgtgactcttaggattttga 366
           ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 507 gtggaaatgttgctacccattgtcacaacaagcagctctatgtgactcttgggattttga 566

                                                                       
Query: 367 aatatgatgaaaagctggactttgattttatttaagtttttatggatttaaatttgaatc 426
           |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 567 aataggatgaaaagctggactttgattttatttaaggttttatggatttaaatttgaatc 626

                                                     
Query: 427 taaatagacacatggtggcaagggaatggcgctgctcatgca 468
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 taaatagacacatggtggcaagggaatggcgctgctcatgca 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no350_d20.g1 MSMg01no350_d20.g1 CHROMAT_FILE:
MSMg01no350_d20.g1 PHD_FILE: MSMg01no350_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:06 2005
         (417 letters)



>mm_chr15_91567098_91567914
          Length = 817

 Score =  791 bits (409), Expect = 0.0
 Identities = 415/417 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtgaagttccagtttggtgagatgctccaggtggctactgaggcaacacttctggctc 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 617 tggtgaagttccagtttggtgagatgttccaggtggctactgaggcaacacttctggctc 558

                                                                       
Query: 61  agagcatcaatatctttgagttcgttggcagataggtctaacgacgtgatgtgttctctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agagcatcaatatctttgagttcgttggcagataggtctaacgacgtgatgtgttctctc 498

                                                                       
Query: 121 tcagaagccagggaagaagagctatctgattgcctcatatgggacggcagccttgaggac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tcagaagccagggaagaagagctatctgattgcctcatatgggacggcagccttgaggac 438

                                                                       
Query: 181 ccttttttcccccgaaacaaaagatggaaatgtaagtgtgcacagttgaatgaaactgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ccttttttcccccgaaacaaaagatggaaatgtaagtgtgcacagttgaatgaaactgtg 378

                                                                       
Query: 241 aaaatggactgagccctcttcacctcaggaggcaggctcggcaagaacaccaaactgggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aaaatggactgagccctcttcacctcaggaggcaggctcggcaagaacaccaaactgggg 318

                                                                       
Query: 301 cgcgcgccctctagtggttagaatgcagagcaaataaaagtaactcgtggtgtgaaagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cgcgcgccctctagtggttagaatgcagagcaaataaaagtaactcgtggtgtgaaagct 258

                                                                    
Query: 361 gaactacaaatgaaaataaaaaataggggtggggaaaccataatttggatttcagaa 417
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 257 gaactacaaatgaaaataaaaaatatgggtggggaaaccataatttggatttcagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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