Query= MSMg01no350_m05.b1 MSMg01no350_m05.b1 CHROMAT_FILE:
MSMg01no350_m05.b1 PHD_FILE: MSMg01no350_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:48 2005
(242 letters)
>mm_chr15_92247342_92247978
Length = 637
Score = 329 bits (170), Expect = 1e-94
Identities = 222/250 (88%), Gaps = 21/250 (8%)
Strand = Plus / Plus
Query: 1 cttcttcccaataacctaatttttctccccaaaatcagaagtagtacgtgtatcatctgg 60
|||||||||||||||||||||||||||||||||| | |||||| |||||||||||||
Sbjct: 201 cttcttcccaataacctaatttttctccccaaaa--ataagtag---gtgtatcatctgg 255
Query: 61 atttaattgtgcatcatatagtactttagtgctctgtggttacattcattgatctagtga 120
|||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 256 atttaattgtgcatcacatagtactttagtgctctgtggttacatccatcgatctagtga 315
Query: 121 aaattactgtatctaatg-------------ctga--ccgatggtctggacttcacccgt 165
|||||||||||||||||| |||| | ||||||||||||||||| |||
Sbjct: 316 aaattactgtatctaatgtttacactaaaatctgagacagatggtctggacttcacacgt 375
Query: 166 ctttctctctgacaaccacatacagcatgacctcgtgggctgctctcatgacaggcaccc 225
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 376 ctttctctctgacaaccacatacagcatgacctcatgggctgctctcatgacaggcaccc 435
Query: 226 aggggttcgt 235
|||| |||||
Sbjct: 436 aggg-ttcgt 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 637
Length adjustment: 9
Effective length of query: 233
Effective length of database: 628
Effective search space: 146324
Effective search space used: 146324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no350_m05.g1 MSMg01no350_m05.g1 CHROMAT_FILE:
MSMg01no350_m05.g1 PHD_FILE: MSMg01no350_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:48 2005
(463 letters)
>mm_chr15_92350030_92350893
Length = 864
Score = 882 bits (456), Expect = 0.0
Identities = 462/464 (99%), Gaps = 1/464 (0%)
Strand = Plus / Minus
Query: 1 atcgtttatacatttttgcctctgttcagagattgttcgtaaagggcaaaatcataagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 atcgtttatacatttttgcctctgttcagagattgttcgtaaagggcaaaatcataagct 605
Query: 61 gaaaactgtgacccagatctgtagaagagcatgcaagcctttcatgcaactgaagatggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gaaaactgtgacccagatctgtagaagagcatgcaagcctttcatgcaactgaagatggc 545
Query: 121 acagtgcacggggataagccagaggagctctgcattaaagccaggcaaagacctatggaa 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 acagtgcacagggataagccagaggagctctgcattaaagccaggcaaagacctatggaa 485
Query: 181 cactcttccaaagtccttaacatagtgtgcatgaaagagccttcacatgcatcataatgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 cactcttccaaagtccttaacatagtgtgcatgaaagagccttcacatgcatcataatgc 425
Query: 241 atcgacacacatatgcacatttgcatgcatacttacatctagatagtaaggactgtgtat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 atcgacacacatatgcacatttgcatgcatacttacatctagatagtaaggactgtgtat 365
Query: 301 ttttttctgtgagataataga-tttttttttttgtcttgtagttttattttcttgacacg 359
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttttttctgtgagataatagattttttttttttgtcttgtagttttattttcttgacacg 305
Query: 360 gctatagtcagttacaaggtcttgtagctaaatgttgatgaagctccttttaattttcca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gctatagtcagttacaaggtcttgtagctaaatgttgatgaagctccttttaattttcca 245
Query: 420 ctaacatgacaattaggctttattaaacttatgaaaaatataca 463
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ctaacatgacaattaggctttattaaacttatgaaaaatataca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 864
Length adjustment: 10
Effective length of query: 453
Effective length of database: 854
Effective search space: 386862
Effective search space used: 386862
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
