BAC Information

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BAC

Clone NameMSMg01-352F04
Chromosome15 (Build37)
Map Location 88,650,442 - 88,650,758
singlet/doubletsinglet
Overlap geneCreld2
Upstream geneLOC100042329, LOC100042340, Zdhhc25, Brd1, Zbed4, Alg12
Downstream genePim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a, LOC676575, Syt10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352F04.T7 (MSMg01no352_f04.b1)MSMg01-352F04.TJ (MSMg01no352_f04.g1)
ACCAG463477AG463478
length759788
length of high quality
(start - end)
215 (57 - 271)317 (85 - 401)
definitionCHROMAT_FILE: MSMg01no352_f04.b1 PHD_FILE: MSMg01no352_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:49 2005CHROMAT_FILE: MSMg01no352_f04.g1 PHD_FILE: MSMg01no352_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCTTACTAATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCAGCTGTTTTCTTGGCACTGTGGCATCGGTAACTT
CAGCTACACTCAAACTAACTCTTCCTACTTTTCTGGTCTATTTCACTATA
AATCTAAGAGCAGCAAACAGTGACCACACCACAGCTGATGTGCACCATAT
CTTGAAATGTCCTCCACTAAACAACTTAGTTCACTGCATTTAANTCAGTC
TTACTTAAGCTTTGAGGAATAAGCAGGAACAGCTGAGTTTGCTTGAGGTG
ACTCCCAGGACAGCCCTGAGTGCTTTCTGAGCGCTGTGGGCAAGAGTTGG
TGTTCCACTCCTGTCTTCCATGTTCCCCATAGGACGGCCATTAAACTCAT
ACAGTTCTTCAGCCTCTAGCCTCCAGTTTCAGAATTCTTTCACAACTTTT
CCTGTATCCAAAATTCCTAAGAAAACTTTAACGCCAGGTTTCCTCTCAGT
TAAAACCGTTGGTTTCCTCAAAACGGGCCGGGGAATAAATTGCTTCTATT
GGCCTAATCCTAAACCTATAGTGGCCAGTACCCCTTACCCCCCCTTTTTC
CCCCCTTTTTCTCCGGGTCTAAATTTTCGCGTCTTCCTCCCTTTTTAAAA
CGTTTTTTGCCACGCTTTTTCTTTTCTTTCCCCCCCCCTTTTTTGTATTT
CTCCCTCCTACTCTAATTTCTTTACTCTGTTAAACCATATCTCCCACCTA
TCGATCTCA
NAAAAAAAACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTGAGTGTTCCCAA
GAAGTGCGAGGATGTGCGGTCGCGGTCTGTGAATCGGTGGTCAGACCTTG
GGGTCGGTGCAGACCACCGGCACACGGAGGAACCCCTTCGATGGTGGTGG
ACACCTGTCAATGGTCGTCCCTGCCTCTGGCCACTTAACTGGTCTGTGGT
TTCCACACTCCCTACGGTCACTTCTGTGCGCACAGACACTGGAAGGCTTT
TACACACACGCACACGGGCCTTTTGGAAACTCAGGCCGGAGCCCCTCGCC
CTTCTAGAGACTTCTGGCTTCCCTGACTAATGGAATAAGCTCCCTTTCTC
ATGCTGTAGGGATGGCGCCNTCTACTCATTCCTGTCGCCGTTGCCCATTT
TCCGCCGAGTCTTTTTTTCACCGATTACTCTTGCCTGTTCCCCGCCCCCC
TTCCCTTCTCTCCTTTCCCCTTTTTCTTTCTCCTTTCCTGTTTTAATCCC
TTTTTTTCCTCTCTCTTTTCCCCCCCCTTTACTTTTTCTTTTTTTTTTTT
CCTTTCCCCCTCTTTTTTCCCCTTTTTCCGCCTTTTCCCTTTCTTTTCCC
TCCTTTTCGTTCCCTATTTTTTTTTTTTCTTCCCCTTCCCCCTTTTTCTT
TTTCTCCTTTTTCTTGTCCCCCCCGCGTTCTTCTATTTTCTCGCCCTTCC
GCTTTTCCTTTCCCCGTCTTTGCCTTCCTCCTCTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_f04.g1 MSMg01no352_f04.g1 CHROMAT_FILE:
MSMg01no352_f04.g1 PHD_FILE: MSMg01no352_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:49 2005
         (317 letters)



>mm_chr15_88650242_88650958
          Length = 717

 Score =  574 bits (297), Expect = e-168
 Identities = 312/317 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtgagtgttcccaagaagtgcgaggatgtgcggtcgcggtctgtgaatcggtggtcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtgagtgttcccaagaagtgcgaggatgtgcggtcgcggtctgtgaatcggtggtcag 260

                                                                       
Query: 61  accttggggtcggtgcagaccaccggcacacggaggaaccccttcgatggtggtggacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accttggggtcggtgcagaccaccggcacacggaggaaccccttcgatggtggtggacac 320

                                                                       
Query: 121 ctgtcaatggtcgtccctgcctctggccacttaactggtctgtggtttccacactcccta 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 ctgtcaatggtcgtccctgcctctggccactcaactggtctgtggtttccacactcccta 380

                                                                       
Query: 181 cggtcacttctgtgcgcacagacactggaaggcttttacacacacgcacacgggcctttt 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cggccacttctgtgcgcacagacactggaaggcttttacacacacgcacacgggcctttt 440

                                                                       
Query: 241 ggaaactcaggccggagcccctcgcccttctagagacttctggcttccctgactaatgga 300
           |||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 ggaaactcagactggagcccctcgccctcctagagacttctggcttccctgactaatgga 500

                            
Query: 301 ataagctccctttctca 317
           |||||||||||||||||
Sbjct: 501 ataagctccctttctca 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)