BAC Information

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BAC

Clone NameMSMg01-352P06
Chromosome15 (Build37)
Map Location 26,997,231 - 26,997,565
singlet/doubletsinglet
Overlap genenone
Upstream geneAK162044, Fbxl7, LOC622531, LOC625311
Downstream geneAnk, BC087945, LOC100040622, BC052328, Trio
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352P06.T7 (MSMg01no352_p06.b1)MSMg01-352P06.TJ (MSMg01no352_p06.g1)
ACCAG463951AG463952
length807771
length of high quality
(start - end)
77 (77 - 153)337 (79 - 415)
definitionCHROMAT_FILE: MSMg01no352_p06.b1 PHD_FILE: MSMg01no352_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:40 2005CHROMAT_FILE: MSMg01no352_p06.g1 PHD_FILE: MSMg01no352_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGGA
TCCGCNGGATTCAAAACATTTTCCTCTGGAAATGAATGATTTTTTTAATT
GAGTGGATTTTTCTAGGGTTTGCTTTTAGTATAAGTTTTACAAAGTAGCT
CAGAAGTAAACACAGATACAAACAGGGAGAGACGCCCCTACATTCTGTAA
CTATGGCTCCAAGTTTTGGACAGGCTGATAAGCGGTTCCTTAATACCAGA
TGCTGAATAGCTATTCTGCATTCCCGCCAGTCTGAAAGGTGCTCTTCCCT
CCCTTGTAACCGTCTGTGCTCTGGTGAATGGCTGGACAGTCTACCCATAC
TCCTCACTTCTTTACATTAGGTTCACTTGACACACATCTTACATCTCGAA
CTGTATAATATGTTTTTTGTTCTCCATCCCCCAAGTNAATTGATCGCTAA
TCATCGGTGCATACATCCTTACTGCCCTCTTTCTCCTTGCGCCCTCACTT
TTATCTTTTTTTCCCCCCCTACCCCGTGTCTTTTTCTTCTTCTACTATCC
TTCCTTCCTTTTTTCGTTCTCTCTCTTCCTTTTTTCCCCTTCCTCTCTCC
TTTATTCCTCCCTTTCCCTTTCCCCCCCTTTTTATCTTCTCTCCTCTTCT
TCGTTCGCTCTCATTCACCTACTTTCGCTCTTATTCCCCCTCCTTTCATT
ATCCGCTTTCTCCCCTTTCTTCTCTCCCCCCATTTATTATCTTTATACCT
ACCTTCTCCTATCTCCAGACCTCTCTTCCTCCTCTTCTATCACCTTACCT
ATTCATT
NCCCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACACAGCTTCTTAAATACTTAT
CAGCTATTATCTGCAGAAAGAGTGTTCCTGGGAGGCTTATGTGTTGCAGG
CTTTGTATATGAGGCAAAGGATGTTCAGAGATGAGGTTCCTGGAAAGTGA
CCCTAATCTCTGGACTCTGACTTTATCAAATTGATAGATCCATTAATAAA
TTTATAATTGAGTAACTTGCGAGGCACAGTGGAAACTGTGGCATATGGAG
CCTAATTAAAGAAAGGTTACTGACAGCATGCCTTTCAAAGGTAGATCTCC
ATCTTAGCCCTTAGCTTGCATTCTCTGATTACAGAGTGCCCTGATATGAG
CAATTTTGTCTCATGAACCCCCTTTTTGCATTACTATTTGCCTTGCCCCA
GGCCTAACCCCATACATACAGCCCCTCATGCACTATAACATCCGACACCA
CCAGTCATTCTCCCCCTTGCCTCTTTGTACTTCCGATGCCGCTGTCAGCA
CCCCGATCTACTTCTTCTCCCCACTTCCCTCTCTCTCTTTTTTTCTCCCT
TCCCCCTTTTTATCCCCTCTTTCCTCCTTTTACTTTTCTTTCCCTCCTTT
CCTTCCCTCTCTTTTTTCTTTCCCCGCTTCCCCCCCTATCTCCCCCCCCT
TTTCCTCCCCCCCCCCCTTCTTCTTTTTTCCCCCTTCTCCTTTCCTCTCC
CTTTATCCCTTCCCCTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_p06.g1 MSMg01no352_p06.g1 CHROMAT_FILE:
MSMg01no352_p06.g1 PHD_FILE: MSMg01no352_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:40 2005
         (337 letters)



>mm_chr15_26997031_26997767
          Length = 737

 Score =  648 bits (335), Expect = 0.0
 Identities = 335/335 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacagcttcttaaatacttatcagctattatctgcagaaagagtgttcctgggaggctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 acacagcttcttaaatacttatcagctattatctgcagaaagagtgttcctgggaggctt 476

                                                                       
Query: 61  atgtgttgcaggctttgtatatgaggcaaaggatgttcagagatgaggttcctggaaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 atgtgttgcaggctttgtatatgaggcaaaggatgttcagagatgaggttcctggaaagt 416

                                                                       
Query: 121 gaccctaatctctggactctgactttatcaaattgatagatccattaataaatttataat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gaccctaatctctggactctgactttatcaaattgatagatccattaataaatttataat 356

                                                                       
Query: 181 tgagtaacttgcgaggcacagtggaaactgtggcatatggagcctaattaaagaaaggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tgagtaacttgcgaggcacagtggaaactgtggcatatggagcctaattaaagaaaggtt 296

                                                                       
Query: 241 actgacagcatgcctttcaaaggtagatctccatcttagcccttagcttgcattctctga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 actgacagcatgcctttcaaaggtagatctccatcttagcccttagcttgcattctctga 236

                                              
Query: 301 ttacagagtgccctgatatgagcaattttgtctca 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 ttacagagtgccctgatatgagcaattttgtctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)