BAC Information

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BAC

Clone NameMSMg01-353F20
Chromosome15 (Build37)
Map Location 48,084,471 - 48,084,864
singlet/doubletsinglet
Overlap geneCsmd3
Upstream geneLOC665130, LOC100039485, LOC100039493
Downstream geneEG665146, LOC100039600
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353F20.T7 (MSMg01no353_f20.b1)MSMg01-353F20.TJ (MSMg01no353_f20.g1)
ACCAG464261AG464262
length772781
length of high quality
(start - end)		352 (54 - 405)394 (83 - 476)
definitionCHROMAT_FILE: MSMg01no353_f20.b1 PHD_FILE: MSMg01no353_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:13 2005CHROMAT_FILE: MSMg01no353_f20.g1 PHD_FILE: MSMg01no353_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCACTAATGAATTCAACTCTACTGCACTGTACTCACTGA
CTGACTCCCAACTCACTTAACTCCCAATCAATTCTCTCTTCTTATTCTGC
TTTTAAATAGTTCCTGCGAGAGATGGGCCTATCCTATCTCTGTCTCATTT
TGCCATATTTTTCTCTGATTTGTCACTTTGCCCCTCAACTACGAGTTTGG
ACTTATGGCTCCAACTGCATATGTAACAGAGGATGGCCTTGTCAGGCATC
AATGGGAGGAGAGGCCCTTGATCCTATGAAAGCTCAATGTCATAGTGTAG
GAGAATGCCAGTGTGGGGAGGCAGGAGTGAGTGAGTGAGTGGGTAGGTGG
ATGNNTGANTGNNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTNNNNNNTTTNNTNTTNNNTTTTTTTTNNTTTTTTTTTTTTTTN
NTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTT
TTTTTTTTTTNTTTTTTNTTTTTTTTTTTTNTTTTTTTTTTTNNTTTTNT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTNTTTNNNNTTTTTTTTTTTTTTTTTNTTTTTTTT
TTTTTNNNTTTTTTTTTTTTTTTNTCCTTTTTTNTTNTTTTTTTCCCTNT
TNNTTTTTTTTTTTTTTTTTTN

NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTTTTCCATTTCTATT
GCTTGATCGTGTATCTGTGATTACTTATAATTGCTACATTTCTGCATTTC
TTAGCATATCAGTTGTAACTTTTTAGTTCTTACTGGGAGCCGTTTTTAAG
TCACCACACCCAGGGTATTCTTCTTAGATATAATGAGAAAGATGTCAGAA
TAGAGAAGGGGCATATGTACTAGGTACTATAAAGAGAAAAGATATTTCAG
GATTGGCTAGATATAGAAGTAAAATGTAATAAGAAAGGATTAAAAATGAT
ATTCAAGTGTATATGAATAGAACAATCTTGTGTTGTTAATAAATATGAAG
GAACTGAAAATGGAGTTATGTGGGAGGGAATCCACAGTTACTACAACATT
GTCACTGCTATTTTTAGCATTCACTATGTGCCCGGCATTATGTTAACCAC
TGCATATACTTTCTCTCATTTGCGCCCCCAAAAAAAATTGTTGGAGACAT
TACTCTCTCCCTTTTACAAAGTGAAAAGCCTACGGTTGAGAGGAATGCCG
TCTTTCCCATCTTTAAACGGTTGCCACTGCTTTGTTTAAAGAAATCCTTA
TACAACTGGCTAGGCAAAACCCTCTTCTTTAATCCCCTTTTCGGCTTTCC
CATCCCTTATTCCTATCCCTTCCCGTTTGGTGCGGCTATCCCTCCGGGTT
ATTCGTTTCCCTTTTTTCCTCCTTTTCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_f20.g1 MSMg01no353_f20.g1 CHROMAT_FILE:
MSMg01no353_f20.g1 PHD_FILE: MSMg01no353_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:13 2005
         (394 letters)



>mm_chr15_48084271_48085064
          Length = 794

 Score =  731 bits (378), Expect = 0.0
 Identities = 390/394 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   accttttccatttctattgcttgatcgtgtatctgtgattacttataattgctacatttc 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 594 accttttccatttctattgcttgattgtgtatctgtgattacttataattgctacatttc 535

                                                                       
Query: 61  tgcatttcttagcatatcagttgtaactttttagttcttactgggagccgtttttaagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 534 tgcatttcttagcatatcagttgtaactttttagttcttactgggagccttttttaagtc 475

                                                                       
Query: 121 accacacccagggtattcttcttagatataatgagaaagatgtcagaatagagaaggggc 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 accacacccaggggattcttcttagatataatgagaaagatgtcagaatagagaaggggc 415

                                                                       
Query: 181 atatgtactaggtactataaagagaaaagatatttcaggattggctagatatagaagtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 atatgtactaggtactataaagagaaaagatatttcaggattggctagatatagaagtaa 355

                                                                       
Query: 241 aatgtaataagaaaggattaaaaatgatattcaagtgtatatgaatagaacaatcttgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aatgtaataagaaaggattaaaaatgatattcaagtgtatatgaatagaacaatcttgtg 295

                                                                       
Query: 301 ttgttaataaatatgaaggaactgaaaatggagttatgtgggagggaatccacagttact 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ttgttaataaatatgaaggagctgaaaatggagttatgtgggagggaatccacagttact 235

                                             
Query: 361 acaacattgtcactgctatttttagcattcacta 394
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 acaacattgtcactgctatttttagcattcacta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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