BAC Information

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BAC

Clone NameMSMg01-353K21
Chromosome15 (Build37)
Map Location 26,323,109 - 26,323,559
singlet/doubletsinglet
Overlap genenone
Upstream geneEG432939, LOC100040583, Myo10, LOC100040602, Ppia-ps15_175.1, 1810015C04Rik, Zfp622, AK162044
Downstream geneFbxl7, LOC622531, LOC625311
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353K21.T7 (MSMg01no353_k21.b1)MSMg01-353K21.TJ (MSMg01no353_k21.g1)
ACCAG464499AG464500
length771785
length of high quality
(start - end)
451 (74 - 524)54 (77 - 130)
definitionCHROMAT_FILE: MSMg01no353_k21.b1 PHD_FILE: MSMg01no353_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:37 2005CHROMAT_FILE: MSMg01no353_k21.g1 PHD_FILE: MSMg01no353_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAAGATTGTTGGCTCTGACTAGAGTAGTAGGCATGTGAATT
GGATTTGAGACGATCCCTTTCCGTGATCCACTACACAGCCTTGCCTGTTT
ACAACCCACCACAGAAAAGTTCTGGGTTCCCCATACCTTGAGTGCTATCA
GCTCGTTTTCTTATTGCTGTTGGGGCTTTAGCAATACAGAACAGAATTAG
ACTCTTTTTTTCCCCCACATCAGTTCTATAACTAGATCAGTATGGCAATT
TTGCCTAAGAAAATAAGTATGGCCACCCAGGGTCATGGCAGCAGGCAGTC
TGTCTTCCCTACAGTCTTGAAGAGCAGTGGTGCAGTATAAAGAGACACAA
AGTAAGTTTCCTGTGACTTCCTTCCAGAGAGCGGTACCTACTGACTCTCA
CACACTCCGGATTCCCCAGCATGCTTAGAGGCTCTAGGGTCAGTTACTTC
TGCTCTTTGACACATTTGCTTTTGTTTCTGTGAAGAATGTTTTGCCTGAC
AGTACTTGAAGAAACAGCTTCTCTCTCTCACTTGGCTACCAGCCAAAAAA
CTCATCTGTGAGTTTTCTTCTCCCTGGGAACTCTGAGGGTTAAGCCCCCC
ATTCCGAAAAGGAAGAGGCAACTTTGGTTACTCTTTCCCCCCCGACACTC
TTTCTAAGGGAGTTAAAACGATCCCAATTCCTCCCGAAGTTCTTTGGAAA
AGGCGTAATTTTTCCCCCCCC
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGTTGGAGATCATTTCCATGTGC
GGTTGTTGCCTTTATAGAAAATTCTAAGCAGAATGATAATACTAACCTTG
GTGTGAGCACCTCAGCCTATATTAAGTGAGGAAGCAGAGAGAAGAGGTAC
ACCGATGAAATGTTAATGAATCCCAGAGATGTGTCGGCTTCTTAGGACTG
CAGCCTTTAGTTCCTGCTGGTAGTCCCTGTCAATATTTCCAACTTCAGCC
AGCAGGTAACTACAAGGGATTTGTCTCATAGCAAGAGACACAGGAGATTT
TCTTTAATGTGTTAATTGAGCAACTTTTGAGTGATTGAATCCAGGTAAGA
CTGGACAGCTCAGAGGTGATAAAGAGAGTCCCTGGTTTCGCGGTACCCAC
TGTACCTCACAGGAGAGGCACTGTCTGAAGAGGACAGGATGGAAGACAGA
TGCGTCTGAGCTCAAAGGAAACATANATGTATCTAAATTATTTACTTTGC
AGGTCCGCAGAATATCCGATGAAATCACAGAATAACTTTTTCGATTTCAC
CAAAAACCCTGACGGTATTTCTTAATCCTATTATAGTGGGGGAAGTATTA
AAAGTTTTGGCTTTTATTTAAGGAAACCAACTTCTTTTGTGATGAGAAGG
CGCCCTCCCCTAAAATACCCCCTCGTCCTTCTTGTAAGCCCTCCCTAAAA
ATTTTCTTTCTCCCTTTTAAATTTTGTTCGTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_k21.b1 MSMg01no353_k21.b1 CHROMAT_FILE:
MSMg01no353_k21.b1 PHD_FILE: MSMg01no353_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:37 2005
         (451 letters)



>mm_chr15_26322909_26323759
          Length = 851

 Score =  795 bits (411), Expect = 0.0
 Identities = 441/451 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgactagagtagtaggcatgtgaattggatttgagacgatccctttccgtgatccacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgactagagtagtaggcatgtgaattggatttgagacgatccctttccgtgatccacta 260

                                                                       
Query: 61  cacagccttgcctgtttacaacccaccacagaaaagttctgggttccccataccttgagt 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 cacagccttgcctgtttacaacccaccacagaaaagttctgggtttcccataccttgagt 320

                                                                       
Query: 121 gctatcagctcgttttcttattgctgttggggctttagcaatacagaacagaattagact 180
           |||||||||||||||||||||| |||||| ||||||||||||||||||| | ||||||||
Sbjct: 321 gctatcagctcgttttcttatttctgttgtggctttagcaatacagaactgtattagact 380

                                                                       
Query: 181 ctttttttcccccacatcagttctataactagatcagtatggcaattttgcctaagaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttttttcccccacatcagttctataactagatcagtatggcaattttgcctaagaaaa 440

                                                                       
Query: 241 taagtatggccacccagggtcatggcagcaggcagtctgtcttccctacagtcttgaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taagtatggccacccagggtcatggcagcaggcagtctgtcttccctacagtcttgaaga 500

                                                                       
Query: 301 gcagtggtgcagtataaagagacacaaagtaagtttcctgtgacttccttccagagagcg 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcagtggtgcagtatacagagacacaaagtaagtttcctgtgacttccttccagagagcg 560

                                                                       
Query: 361 gtacctactgactctcacacactccggattccccagcatgcttagaggctctagggtcag 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 561 ttacctactgactctcacacactccggattccccagcatgcttagaggctccggggtcag 620

                                          
Query: 421 ttacttctgctctttgacacatttgcttttg 451
           ||||||||||||||||||||||||| |||||
Sbjct: 621 ttacttctgctctttgacacatttgtttttg 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)