BAC Information

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BAC

Clone NameMSMg01-354G05
Chromosome15 (Build37)
Map Location 82,160,099 - 82,160,638
singlet/doubletsinglet
Overlap geneNaga
Upstream geneSlc25a17, St13, Xpnpep3, Dnajb7, Rbx1, EG383080, Ep300, L3mbtl2, Rangap1, Zc3h7b, Tef, LOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl
Downstream geneC920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354G05.T7 (MSMg01no354_g05.b1)MSMg01-354G05.TJ (MSMg01no354_g05.g1)
ACCAG465029AG465030
length757753
length of high quality
(start - end)		543 (52 - 594)543 (80 - 622)
definitionCHROMAT_FILE: MSMg01no354_g05.b1 PHD_FILE: MSMg01no354_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:31 2005CHROMAT_FILE: MSMg01no354_g05.g1 PHD_FILE: MSMg01no354_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTGGCATTGAGTCAGGTCTCTCTTCTTAATTTTAAAAAT
TCCAAATCCTGATTTCTGAGTCAGCAAAGTCAGAGGCTGGAGTCCAGTGG
GCATCAGGACCCTGCCTGCGGGGGCTCGGGAGGCTGGCCGAGTGAAATCT
GCAGAGCTGTGTAGGGGCAGAGGCCGGAAGGCCACAGGAAACTGTCCCAA
GAGTTCCAAGCTTCCAAGAAGGCCCCTGCTTCAGCTGGACCTGGCATTGA
ACCTGGGCCCTGCAAATGCACTTTGGGGGGTGGAGGTCACATCACCAAGC
AGCCTGTGGAGGACAGAGCCCTGCCATGTCCTCGGCCTGTCAAGGCTCTG
TGGTCCAGGCTCAGTGGGGCTGCCGTAGCCTGTCATTCTTGGGTCCTCAC
CAGTGGGACATCATCGTGGATATCCCCAGGTCTTTGATGGGATAGAGGTA
CCACATCACAACCCCCGAAGGATTGATGATCACAGTGAAGTTGACTTCAG
TCTGGAGACCACTGAAGATATCTCCTGTGAAGACGTTCTGGCCCTGTTTT
GCGGAGGGATGCATCGTTATCAAGGCTACACCCGCACACGCGCACGCGAC
TGGAGAAAGCTGTATTTTCACCCTAGCTGAAAGAGGCCCCCTAGCCCCTT
TACTTAAAATCAGGTTGACAGAGGGCCCAGGACAAAAAACAAAAAACCCC
CCCCCTG

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACACACAGTCCAGGCACGTGC
TCAGGTCGTTCAGATCACGAGGAACAGTCCAGCCTGGCAGGCAGCCCAGG
CATGCAGCCTCACTGCGCATGCTCGGGCAAGGAAGTAAACAAGTGGGTTT
CACAGGGCCTGCGGCCGCACCTGCTTCCCACAGTCCATGGGCAGGTAAAG
GTGGGTCAGGAACATATGTCTAATACAGCTTCCCTGTCACCATTGTCAGG
GGACTCAGCAAGCTCACAGTCAGGACCATTCTTTTTCCCAGCATCAGCAT
GTCTCAACAATGGCTCAGGCAATTCCCATGCTCCTTCAGCATTCTGAGGA
AAAAATACAAACATGCCCTCGTTTCCATATTAATACCTGATCAGGATCAT
GCCATATACCAATAAGTGGATCTTTCCATTTCATCTACACATAAGTATAT
ATAGTTTTAGGGTGCCATAAAGACCCAGGTGAGAATTCATTGACATCCAA
ATTTCAAACATTTAAAATAAAAAGAACATGATTTTATAGTTTTGTGGTAT
CTGGAGACATAATTCCCCATTTTTTTATTTTGTGAAAGTATTGTTTTAAA
GTTCCATGGGCTCGTTCGACAATACCTTTTTCATAAAGAAAATAAGGAAC
CCCATATTTGTGTAAAATTACATTTCTGGACAAATGTCTTCAAAAACTTG
ACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_g05.b1 MSMg01no354_g05.b1 CHROMAT_FILE:
MSMg01no354_g05.b1 PHD_FILE: MSMg01no354_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:31 2005
         (543 letters)



>mm_chr15_82159895_82160838
          Length = 944

 Score = 1006 bits (520), Expect = 0.0
 Identities = 535/540 (99%), Gaps = 1/540 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctggcattgagtcaggtctctcttcttaattttaaaaattccaaatcctgattt 64
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctggcaaggagtcaggtctctcttcttaattttaaaaattccaaatcctgattt 264

                                                                       
Query: 65  ctgagtcagcaaagtcagaggctggagtccagtgggcatcaggaccctgcctgcggggg- 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 265 ctgagtcagcaaagtcagaggctggagtccagtgggcatcaggaccctgcctgcgggggg 324

                                                                       
Query: 124 ctcgggaggctggccgagtgaaatctgcagagctgtgtaggggcagaggccggaaggcca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcgggaggctggccgagtgaaatctgcagagctgtgtaggggcagaggccggaaggcca 384

                                                                       
Query: 184 caggaaactgtcccaagagttccaagcttccaagaaggcccctgcttcagctggacctgg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caggaaactgtcccaagagttccaagcttccaagaaggcccctgcttcagctggacctgg 444

                                                                       
Query: 244 cattgaacctgggccctgcaaatgcactttggggggtggaggtcacatcaccaagcagcc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cattgaacctgggccctgcaaatgcactttggggggtggaggtcacatcaccaagcagcc 504

                                                                       
Query: 304 tgtggaggacagagccctgccatgtcctcggcctgtcaaggctctgtggtccaggctcag 363
           |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 505 tgtggaggacagagccctgccatgtccttggcctgtcaaggctccgtggtccaggctcag 564

                                                                       
Query: 364 tggggctgccgtagcctgtcattcttgggtcctcaccagtgggacatcatcgtggatatc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tggggctgccgtagcctgtcattcttgggtcctcaccagtgggacatcatcgtggatatc 624

                                                                       
Query: 424 cccaggtctttgatgggatagaggtaccacatcacaacccccgaaggattgatgatcaca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cccaggtctttgatgggatagaggtaccacatcacaacccccgaaggattgatgatcaca 684

                                                                       
Query: 484 gtgaagttgacttcagtctggagaccactgaagatatctcctgtgaagacgttctggccc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtgaagttgacttcagtctggagaccactgaagatatctcctgtgaagacgttctggccc 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 944
Length adjustment: 10
Effective length of query: 533
Effective length of database: 934
Effective search space:   497822
Effective search space used:   497822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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