BAC Information

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BAC

Clone NameMSMg01-356N03
Chromosome15 (Build37)
Map Location 99,917,696 - 99,918,213
singlet/doubletsinglet
Overlap genenone
Upstream geneC1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik
Downstream gene4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356N03.T7 (MSMg01no356_n03.b1)MSMg01-356N03.TJ (MSMg01no356_n03.g1)
ACCAG466871AG466872
length746756
length of high quality
(start - end)		522 (41 - 562)481 (72 - 552)
definitionCHROMAT_FILE: MSMg01no356_n03.b1 PHD_FILE: MSMg01no356_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:39 2005CHROMAT_FILE: MSMg01no356_n03.g1 PHD_FILE: MSMg01no356_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGCATACTCTCAAATCTAGAACATTTCATTAAGTAATATTGGAATTCCTG
GGAACTGGAGGTAGTTGTCAGTGGAGTATCTGCTGCATGATGGGTGAGCT
GTGGCTCTGGACTCTGAGAAGCCAGGCACCACACACTTGGAATAGGTAGG
CCGGTCCCTGCAGCTCCCTGACCAGCCAGGGTCACTCTTTGGTCATCAGC
CAGGTTCTAGTGAGAGACCCTGTGCTAAAAGACAAGGTGGGTGATGGCTC
ACACTTAATCTCTGGCCTCTATACACATATGTAAAACGTTTGTCAAACTC
AGCTTTTCAAAACTTGTGATTTTTGCTTGAAATCACTTTTCAGTTCATTG
ATTTTATTTATTTTTGACAAAACAGCAGTTAGATATGCATTTCTTCTTCA
TTCTCTCAAGTAGAAATGGGGTCAAATAGGAAAAAGCAGCTGATCTAGCT
TACCACTCGCTTGCAAATGTGAAATGTTTCCCTTGAGCTATAACAAATAT
AATAAATGTTTCAAATAGGGGTTCACACCGTATAAACGGCTATGCTTGCC
CTACCGCTATGATTAAATATCCTTGTATTTTGAAGATTTCCCTCATTTGG
CGGCGAGGTGCATATTGTTTTGACGTTCCCTCCATGGTATGTCACTCCGG
CTTTCCGTACCCTGGCCTCTCCCCATTTCCTCCTCTCCTTCTGGTT

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTAAAATCCATTTTCTTTTATTCCTTTCTT
TCCTTTCCTGCTTGTAAGAAGAGGTAGCTTGTCAAACCAAGATTAAAATC
CAAAATTTTCTAACAGTTTCTGGCAATCATCTAAAACTTAATTTATTTAA
TCTGAGAGCGAATTTTTGAGAAAACACACAATCTCTATACGCTAAATGTC
TCAAATAGCCTAAAAGTTTACCATGCTAAATCTTTTTTGAAGTCATTATC
AGTCCACACTTAGTTAAATATTTTAAAGCCATCTGTAAAAACGCTCTCTA
TTTTTTGCAACCAACAAAAACACCATTGATAAAATGAATTATATATGTTT
TAGGAAATGATTTCTTAACTTCCAATAAAACCTAATCTATGAATTTTTTG
ACCTTTACGAAGTCTCTTTAAAACCCATTTTTAATTACTCTAAATGTGTT
ATTGCAAATCTCTAGCAAGGGCCTCGAAGCATGCCTGGGCCCAACACACA
ACTTCTTACCCCAGAGAGTTCTGTCTAGGTAAGCTGAACTGACTCAAGGG
GAAGCTGCCTATCGTCTGAAAGCATGGTATAATTTTCTAATGAGGCTATG
CCCTCTTATAAGGGGGGTAAATCAGAAAATTTCATTTTACAATCTTCCCG
ATTCTGAAGAATTAACCCTTTGGGCCTAAACCACCACGTTATAGTCATAA
CCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_n03.b1 MSMg01no356_n03.b1 CHROMAT_FILE:
MSMg01no356_n03.b1 PHD_FILE: MSMg01no356_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:39 2005
         (522 letters)



>mm_chr15_99917492_99918413
          Length = 922

 Score =  971 bits (502), Expect = 0.0
 Identities = 514/518 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgcatactctcaaatctagaacatttcattaagtaatattggaattcctgggaa 64
           ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattctgcataccctcaaatctagaacatttcattaagcaatattggaattcctgggaa 264

                                                                       
Query: 65  ctggaggtagttgtcagtggagtatctgctgcatgatgggtgagctgtggctctggactc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctggaggtagttgtcagtggagtatctgctgcatgatgggtgagctgtggctctggactc 324

                                                                       
Query: 125 tgagaagccaggcaccacacacttggaataggtaggccggtccctgcagctccctgacca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgagaagccaggcaccacacacttggaataggtaggccggtccctgcagctccctgacca 384

                                                                       
Query: 185 gccagggtcactctttggtcatcagccaggttctagtgagagaccctgtgctaaaagaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gccagggtcactctttggtcatcagccaggttctagtgagagaccctgtgctaaaagaca 444

                                                                       
Query: 245 aggtgggtgatggctcacacttaatctctggcctctatacacatatgtaaaacgtttgtc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggtgggtgatggctcacacttaatctctggcctctatacacatatgtaaaacgtttgtc 504

                                                                       
Query: 305 aaactcagcttttcaaaacttgtgatttttgcttgaaatcacttttcagttcattgattt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaactcagcttttcaaaacttgtgatttttgcttgaaatcacttttcagttcattgattt 564

                                                                       
Query: 365 tatttatttttgacaaaacagcagttagatatgcatttcttcttcattctctcaagtaga 424
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 catttatttttgacaaaacagcagttagatatgcatttcttcttcattctctcaagtaga 624

                                                                       
Query: 425 aatggggtcaaataggaaaaagcagctgatctagcttaccactcgcttgcaaatgtgaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 625 aatggggtcaaataggaaaaagcagctgatctagcttaccactcgcttgtaaatgtgaaa 684

                                                 
Query: 485 tgtttcccttgagctataacaaatataataaatgtttc 522
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgtttcccttgagctataacaaatataataaatgtttc 722


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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