Query= MSMg01no357_c13.b1 MSMg01no357_c13.b1 CHROMAT_FILE:
MSMg01no357_c13.b1 PHD_FILE: MSMg01no357_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:05 2005
(587 letters)
>mm_chr15_96595640_96596628
Length = 989
Score = 1069 bits (553), Expect = 0.0
Identities = 578/587 (98%), Gaps = 5/587 (0%)
Strand = Plus / Plus
Query: 5 gaattcctctgtgttc-tcatgggtgcctgctgctagaaactcctgaagttctttataca 63
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcctctgtgg-catcatgggtgcctgctgctagaaactcctgaagttctttataca 262
Query: 64 gctgattgtgaattaaagtttcattgctgtgccctcagaaagtttccatttgtgaccaca 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 263 gctgattgtgaattaaagtttcattgctgtgccctcagaaagtttccatttgtgaccaaa 322
Query: 124 gccctcccccccc-atacagttatctgaccccaggtggagttgcagcccacagtttaaga 182
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gccctcccccccccatacagttatctgaccccaggtggagttgcagcccacagtttaaga 382
Query: 183 agctataattgggctggagagatggctcagtggttaagagcactgactgctcttccagag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agctataattgggctggagagatggctcagtggttaagagcactgactgctcttccagag 442
Query: 243 gtcctgagttcaattcccagcatccacatggtgtctcacaaccatctgtaatgggatctg 302
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 443 gtcctgagttcaattcccagcatccacatggtggctcacaaccatctgtaatgggatctg 502
Query: 303 atgccctcttctggtgtgtctgaagagagcaacagtgaactcacatgcataaaataaata 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atgccctcttctggtgtgtctgaagagagcaacagtgaactcacatgcataaaataaata 562
Query: 363 aatcttaaaacaaaacaaccaaacaaaaccatgaagctatgctcaaacagccgactccac 422
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 563 aatcttaaaacaaaacaaccaaacaaaaccatgaaactatgctcaaacagccgactccac 622
Query: 423 tggatacctctactctagactcagagttgttggcagctcagaagctaatgcttatgggtg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tggatacctctactctagactcagagttgttggcagctcagaagctaatgcttatgggtg 682
Query: 483 atttatctaaaaatacagtggtcaaaaaaaa--gaggtaaccaatgctctaatcaaatat 540
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 683 atttatctaaaaatacagtggtcaaaaaaaaaagaggtaaccaatgctctaatcaaatat 742
Query: 541 caaaagggaaaacaaacccaaaacaaaataacaacaaaaacaacaaa 587
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 caaaagggaaaacaaacccaaaacaaaataacaacaaaaacaacaaa 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 989
Length adjustment: 10
Effective length of query: 577
Effective length of database: 979
Effective search space: 564883
Effective search space used: 564883
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_c13.g1 MSMg01no357_c13.g1 CHROMAT_FILE:
MSMg01no357_c13.g1 PHD_FILE: MSMg01no357_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:05 2005
(491 letters)
>mm_chr15_96787408_96788293
Length = 886
Score = 919 bits (475), Expect = 0.0
Identities = 485/491 (98%), Gaps = 5/491 (1%)
Strand = Plus / Minus
Query: 1 ttctggaacctggttttcatgtatcctcaacttccttagtgggaaatgagtctgtagcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ttctggaacctggttttcatgtatcctcaacttccttagtgggaaatgagtctgtagcat 627
Query: 61 ttgtcttttatgacaattagagagttagagccttacctttttcttttcttttcttttttt 120
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 626 ttgtcttttatgacaattagagagttagagccctacct-----ttttcttttcttttttt 572
Query: 121 aagaaatgggaaatataaaaatgtttggctgcacctggtaaagttctaatattgatcgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 aagaaatgggaaatataaaaatgtttggctgcacctggtaaagttctaatattgatcgac 512
Query: 181 tcaacactaaatctttttatttaatattatgaagtattttgtgcgcctatgatctcacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tcaacactaaatctttttatttaatattatgaagtattttgtgcgcctatgatctcacat 452
Query: 241 gtagaacataaacagaatcaaacaaaaagaatgtttagaagcttgttttatttatcattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gtagaacataaacagaatcaaacaaaaagaatgtttagaagcttgttttatttatcattt 392
Query: 301 tctaagtacaaaggtttttctaaagaattggatttacaaagggctcttcataagattaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tctaagtacaaaggtttttctaaagaattggatttacaaagggctcttcataagattaaa 332
Query: 361 ttgattggtgttttctctgttgcctggagaccaaacttattgatctaggcttcattactt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ttgattggtgttttctctgttgcctggagaccaaacttattgatctaggcttcattactt 272
Query: 421 tataactaatgtgaaggggaaggaaacaaagaacaggaacggaatagactatacaagctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tataactaatgtgaaggggaaggaaacaaagaacaggaacggaatagactatacaagctt 212
Query: 481 gtggagattaa 491
|||||||||||
Sbjct: 211 gtggagattaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 886
Length adjustment: 10
Effective length of query: 481
Effective length of database: 876
Effective search space: 421356
Effective search space used: 421356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
