BAC Information

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BAC

Clone NameMSMg01-357M06
Chromosome15 (Build37)
Map Location 16,522,161 - 16,522,659
singlet/doubletsinglet
Overlap genenone
Upstream geneEG239341, LOC100040087, LOC624183
Downstream geneLOC100040119, Cdh9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357M06.T7 (MSMg01no357_m06.b1)MSMg01-357M06.TJ (MSMg01no357_m06.g1)
ACCAG467585AG467586
length7431,621
length of high quality
(start - end)		504 (44 - 547)---
definitionCHROMAT_FILE: MSMg01no357_m06.b1 PHD_FILE: MSMg01no357_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:51 2005CHROMAT_FILE: MSMg01no357_m06.g1 PHD_FILE: MSMg01no357_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCCAACTTTATAATTATACAACTAAAATAATAACAATATAAAAATAT
CCCACACACTATGGGTTACTGTTGTAGTCTTGGCATTATGGAGTTGGAGA
CAGGGGGATTATGAATAGGAGGACAGCCTAGCATACATGGTGAGTCTCAA
TACGGCTAAGTCCTTGTAGCAAGAACCTTATTCCAACTACAAGCAAAGAA
AAAGAAAAGTACCAATTTCAGTAATGGCTCTTGTTTATTTCCTCCTGTTT
TCTATTTTGAATATCACAACAATTCCTAATAGATTTAATTTACAGATACC
TTATGGTCAACTCCATTAGCTGTAATTTTTCTTGAATTATTGTCAATTCT
TTATATTTTCCCTTAAGATTAAATTCACCACTAGCTTCAGTTTTACCAAG
CCTTAAACCGTTGAACTTTCTGTGTACTAGGAAAAGTGTACATTCTACAG
ATACATATGCCTTCTAGGAGAATTCTTGTTTCATCACATTTTAACTGTTA
AGTATGGGTCACCCAAGCCAGAAGGACAAATATATTGTGCGTTGGAATGC
AAGGTAAAATTACCTTTTGAGTCATAGTACTTTTGCCGTGTAGTTATTCT
TGTAAAGAAATGGCTATTTACCTTTTTAAAAAGAATATTTTAAGGTTGCT
GAGTTTCCTCACCCGGTTTTTGACAGTTCTTCTTTGGAGGATT

CAATTGACCTTNGTNGGGNNNGTAGGGCCCCTCGGGNCCGNGCCCCCGCC
CCTCGNGNTTCTGCTCCGNNACCNTNNTNTANGGGNTCGNACACCCCTAN
NTANGNANATCGTATTCCTNGCCNGCGNANATNTCCCTCGNNATCGCGNG
NATTCGCGCGCCCATTTCGCGNGTACGCGCGCGNAAACGCGNACCACGNA
NACCANTCGNGNANATACGTCCGCGCGCGTCGNACGNACCGCGNACGNAN
AACGCGNACGCGTNCATCGCGCGCGTCGNNCNCNNCNCNCNNCNCNNCNN
CCNNCCCCCNNCNNCNCCCCCNCNCNNCCNCCNNCCCCNNCCCCCCCCCN
NNCCCCCCCCCCCCCCCCCCCCNNCCCCNCNCCCNCCCCCNNNCNNNNNN
NCCCCCNCNCCCCCCCCNCCCCNNCNNCCCCNNCCCCCCCNCCNCCCCCC
CNCCNNNCCCNNTNNNCCCCNCCCCCCNNNCCCCCCCNNNCNNCCNCNNN
NNCCNCCNCCCTNNCCCNNCNCCCTCCCCCCCGCNCCCCCCCCCCCCCCN
CNCNNNNCTCGCNNTCCCCTCCCCCCCCCCCTCCTCCCCCTTCCTCCCTC
CTTCCTCCTNCCTCTCCTCCTCCTCTTCCCCTCTCTCTCCTCCTCCCCCT
CCTCTCTCGTCCCCCCCCCTCCCCCCTCCCGCCTCNCNCNCCCTCTCCCT
TTTTTCTCCTCCCCCTTTTGTTCCCTCTCCTCCNTCTCTCTCCTTCTTGC
TCCCCCTCTTCCCCTCCTCCGCTCNCTCCCCCGCTCTCTNCCCTCCCTTT
CGCTGTCGCCCNCTCTNCCTCTCTCCTCTTGTCTGCGCCCCTCTTCTCCT
CGCTTCCNNTCTCTCCTCCTCTCTTCTTCACTCTCCCCCTCCTTGCCCCT
CGTCCTTNTTCCGCCTCCTCTCGCTCCTCCCTCTTCTCTCTCTCNTTTTN
TNTGCCCCTCTCTCGCTTCTCTTTCCCCTCTNCTNCCNTNCTNCNCCCCC
TCTCCCGCGCCCCTCGCGTCTNNTNNTNNTCTCGCTCTCGTCTNCGCTCG
CCTCGTCGCCTCCNTCNCNTCNCTTNTCTCCCTNCTCNCNCTTCCNTCCC
TCCGTNNTCTNCTTNCCCCGTNCTCCNCCTCCCCTNTCNCCCTCTNNTNN
TTCTCTCCCCCNCNTNCCCCGCCTNTNNNTTCCCGCATNCCCGTNATTNA
TCTANTATATTCTTANTCCCTCCTCCTCNTCTCTCTCATCTCTCCCCCCC
ATCTCTTTCTCCTCGCTCTATATCTCGTTCTCTCTNCCCTCTANTCCGTC
CTCCCTCCNNCCNTCGGTATCATCCCCTCTACNCTANTNTNTCNNTNCCA
CGCACTCTANTNTCCATTATNATCTCTNCTATCCCCGTATNNTNACTCCC
CNCTCNATATTNNCTCGCATANTTATNGTCTCATNCNTNCNTCTCCATCN
TCCCGTCCCCCANTTTTNCNTCGACNTNTTTNATNTATNATATNTNCCCC
CCCTNATCGTNCCGNTTTCCATTTCCTATACTTCCTCCTCTCCCTCCANT
TNATCNCTCCTCATCACNATCCCTCCCGCCCTATANTATTTTATACNCCC
CTCTCTCCTCTCTCTTCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_m06.b1 MSMg01no357_m06.b1 CHROMAT_FILE:
MSMg01no357_m06.b1 PHD_FILE: MSMg01no357_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:51 2005
         (504 letters)



>mm_chr15_16521957_16522859
          Length = 903

 Score =  882 bits (456), Expect = 0.0
 Identities = 489/500 (97%), Gaps = 1/500 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccaactttataattatacaactaaaataataacaatataaaaatatcccacac 64
           ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 205 gaattctccaactttataattatacaactaaaataataaaaatataaatatatcccacac 264

                                                                       
Query: 65  actatgggttactgttgtagtcttggcattatggagttggagacagggggattatgaata 124
           |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 265 actatgggttactgttgtagtcttggca-tatggagttggagacagggggattgtgaata 323

                                                                       
Query: 125 ggaggacagcctagcatacatggtgagtctcaatacggctaagtccttgtagcaagaacc 184
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 324 ggaggacagcctagcatacatggtaagtctcaatacggctaagtccttgtagcaagaacc 383

                                                                       
Query: 185 ttattccaactacaagcaaagaaaaagaaaagtaccaatttcagtaatggctcttgttta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttattccaactacaagcaaagaaaaagaaaagtaccaatttcagtaatggctcttgttta 443

                                                                       
Query: 245 tttcctcctgttttctattttgaatatcacaacaattcctaatagatttaatttacagat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttcctcctgttttctattttgaatatcacaacaattcctaatagatttaatttacagat 503

                                                                       
Query: 305 accttatggtcaactccattagctgtaatttttcttgaattattgtcaattctttatatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 accttatggtcaactccattagctgtaatttttcttgaattattgtcaattctttatatt 563

                                                                       
Query: 365 ttcccttaagattaaattcaccactagcttcagttttaccaagccttaaaccgttgaact 424
           ||| |||||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct: 564 ttctcttaagattaaattcaccactagcttcagttttaccaagccttacatcattgaact 623

                                                                       
Query: 425 ttctgtgtactaggaaaagtgtacattctacagatacatatgccttctaggagaattctt 484
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttctgtgtactagaaaaagtgtacattctacagatacatatgccttctaggagaattctt 683

                               
Query: 485 gtttcatcacattttaactg 504
           ||||||||||||| ||||||
Sbjct: 684 gtttcatcacattataactg 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 903
Length adjustment: 10
Effective length of query: 494
Effective length of database: 893
Effective search space:   441142
Effective search space used:   441142
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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