BAC Information

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BAC

Clone NameMSMg01-357N24
Chromosome15 (Build37)
Map Location 86,159,329 - 86,159,709
singlet/doubletsinglet
Overlap geneTbc1d22a
Upstream geneAtxn10, EG223745, Wnt7b, LOC100042240, Ppara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu, Celsr1, BC021523, Cerk, LOC100042300
Downstream geneLOC100042309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357N24.T7 (MSMg01no357_n24.b1)MSMg01-357N24.TJ (MSMg01no357_n24.g1)
ACCAG467667AG467668
length746777
length of high quality
(start - end)
---381 (71 - 451)
definitionCHROMAT_FILE: MSMg01no357_n24.b1 PHD_FILE: MSMg01no357_n24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:59 2005CHROMAT_FILE: MSMg01no357_n24.g1 PHD_FILE: MSMg01no357_n24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAAAAAATGCCNCGATGCTCTTATCCACAGATCCGCGNAATTCCCTGTA
TATTAACGACACAGGGTGTGTTTTAGTTCCAGCTGAGACCCATCCCCCAC
CAAANCAAGCTATTTCTGATTCTTACCTGCCCCTTTATTTGTGACACTTC
AACAANCATTTTACGTGTCAGTACATGCTCAGAATAATCTAAGGCAATAC
CTCCCCCCGAGNCTCCTGTCAGTAAAAACCACCTTTTANTATCCAGGGAC
TGAAGGGAGGTAAACCTACCCCAAATGGGGCTAAAGGGCTTCCCAGGGGT
TTTAAAAAANTTTAAATTGTTCTTTTTCTACCCCCAAAAAAAAAGGGGGC
CACCCCCCGGGGGCCCAAAAAAAAAAACGGCTTCGGCCTTCTCCCCNNAA
AAGGGGAACCCCCCTTTGAAAACCCCCCCCCCCCCCCCGCCCCTCTTTTT
TATAAAAACCCCCCCCCCAAAAAAAAGGGCCCCCCCTCTNCNNNNNNNNT
CCCCNNCTCCCCCCCCCCCCCCCAAAACACCCCTTTTTCTTAAAAAATAT
TCCCCCCTCTTCCCTGTTNNCCCTCCCTCTTCTTCCTCCTTCTCTCCCCC
CCTTCTTTCTTTCCTCTTCTTCCTTTTTTCTCCNCCCCTCCCCCTCCCCC
CCCCCCCTCTCCCCCTTTTCTCCTNCCCCTCCNCCCCTTTTCCNCCCCCN
NCCCCCCNCCCCCCCTCCCTTCCTTCTATACAGTAGAGAAGGGGGG
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGGGAGATGATTGCTCAGGCTGTCTTACA
TCCCAGAGTGATTGGCTCAGGTGATGGGGTAGGGGCAGTCTTCCCAAATG
GGCTTCTAATATTTTAGGTCTGGAACATGTATAGACTATGCAGATTTCCA
GCTGATTTTCAGATTTGAAAATAGGTTCATGGTGCTGGAGAAATGGCTCA
GTGGTTAAGAGCACTGACTGATCTTCTAGAAGTCCTGAGTTCAACTCCCA
GCCACCACATGGTAGCTTACAACCATTTGTAATAGGATCTGATGCCCTCC
TCTGGTGTCTGAAGACAGCTACTGTGTACTCCTATACATAAAATAAATAA
ATAAATCTTAAAAAAAAAGGCTCAGTGGTAAAGGAGTGCCCTGGCTAGTT
TTTGTCAGTTTGACACAAGTGTAAACGAAGCTGAGATGAGAGAAGCTCAG
TTCAGGAATTGTCTCCCTCACATTGCCTGGGGGGTATCTTTCTCACATGG
CGGAATGTAACCTGTAACCGTAACCCTTAGGACAGGAAGATTTAAACCCT
GGATGGAAACCCTGCCCCGCCCCCCTTAGGAAAAAAAAAAAATTTGGGTN
ACCTCTGTGCCCCCAAATAAACTTTCCGTGTGGGGCTTTTTGTTGGGGCC
CCCCCCTAAATATACCTCCTCACCTTTAACAACCCCCGGCCCCACCGAAT
TTTGTGTGTGTGTTTTTAAACACTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_n24.g1 MSMg01no357_n24.g1 CHROMAT_FILE:
MSMg01no357_n24.g1 PHD_FILE: MSMg01no357_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:59 2005
         (381 letters)



>mm_chr15_86159129_86159909
          Length = 781

 Score =  706 bits (365), Expect = 0.0
 Identities = 377/381 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagggagatgattgctcaggctgtcttacatcccagagtgattggctcaggtgatggggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggagatgattgctcaggctgtcttacatcccagagtgattggctcaggtgatggggt 260

                                                                       
Query: 61  aggggcagtcttcccaaatgggcttctaatattttaggtctggaacatgtatagactatg 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagggcagtcttcccaaatgggcttctaatattttaggtctggaacatgtatagactatg 320

                                                                       
Query: 121 cagatttccagctgattttcagatttgaaaataggttcatggtgctggagaaatggctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagatttccagctgattttcagatttgaaaataggttcatggtgctggagaaatggctca 380

                                                                       
Query: 181 gtggttaagagcactgactgatcttctagaagtcctgagttcaactcccagccaccacat 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 gtggttaagagcactgactgatcttcgagaagtcctgagttcaactcccagccaccacat 440

                                                                       
Query: 241 ggtagcttacaaccatttgtaataggatctgatgccctcctctggtgtctgaagacagct 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 ggtagcttacaaccatttgtaataggatctgatgccctcctctggtgtctgaagacaggt 500

                                                                       
Query: 301 actgtgtactcctatacataaaataaataaataaatcttaaaaaaaaaggctcagtggta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actgtgtactcctatacataaaataaataaataaatcttaaaaaaaaaggctcagtggta 560

                                
Query: 361 aaggagtgccctggctagttt 381
           ||||||||| |||||||||||
Sbjct: 561 aaggagtgctctggctagttt 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)