Query= MSMg01no358_k18.b1 MSMg01no358_k18.b1 CHROMAT_FILE:
MSMg01no358_k18.b1 PHD_FILE: MSMg01no358_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:00 2005
(470 letters)
>mm_chr15_5979809_5980678
Length = 870
Score = 843 bits (436), Expect = 0.0
Identities = 457/464 (98%)
Strand = Plus / Plus
Query: 7 gaattcagagatccacctgcctctgccccctgagtgctgggattaaagacatgcaccacc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcagagatccacctgcctctgccccctgagtgctgggattaaagacatgcaccacc 266
Query: 67 actgcctggagcaactatctttcttacacagtccatactcacctatccaaagagggaaat 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 actgcctggagcaactatctttcttacacagtccatactcacctatccaaagagggaaat 326
Query: 127 gtgtacagttatcttacatcatttgccaagcagcatgtcccccgaccccctgcaagaatg 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gtgtacagttatcttacatcatttgccaagcagcatgtcccccgaccccctgcaagaatg 386
Query: 187 ctcacagattttagtacagtaatagagtaggcttttccctaggcctgttacctatctagt 246
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctcacagattttagtagagtaatagagtaggcttttccctaggcctgttacctatctagt 446
Query: 247 ttcaggtttttggttactttaacagtgtcacgtatggtcttcatctcatagagtgacctt 306
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 447 ttcaggtttttggttactttaacagtgtcatgtatggtcttcatctcatagagtgacctt 506
Query: 307 aaatctgatcaaagtagtcgttgtttactcccaagaatatttgtgactctactacactac 366
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 507 aaatctgatcaaagtagtcgttgtttacttccaagaatatttgtgactctactgcactac 566
Query: 367 tctatcttgcaggagggttgctgttgtagatggtagggtttgtagctgagagacggtgat 426
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 567 tctatcttgcaggagggttgctgttgtagatggaagggtttgtagctgagagacggtgat 626
Query: 427 gatcacacttctcttccattaacattcagattaccttctccagc 470
||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 627 gatcacacttctcttcccttaacattcagactaccttctccagc 670
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space: 395600
Effective search space used: 395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no358_k18.g1 MSMg01no358_k18.g1 CHROMAT_FILE:
MSMg01no358_k18.g1 PHD_FILE: MSMg01no358_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:00 2005
(485 letters)
>mm_chr15_6130829_6131713
Length = 885
Score = 915 bits (473), Expect = 0.0
Identities = 481/485 (99%), Gaps = 3/485 (0%)
Strand = Plus / Minus
Query: 1 atcaggtacatctctcgagaatgtgctgccaattagtgggttacatgaaggaactgcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 atcaggtacatctctcgagaatgtgctgccaattagtgggttacatgaaggaactgcttt 550
Query: 61 ttgttttaagagcaaagtaataaaaggataaaaggatgcatttattcctatggtcatatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ttgttttaagagcaaagtaataaaaggataaaaggatgcatttattcctatggtcatatt 490
Query: 121 ataaacaaacaaacaaataaataaacaagtagacatcttcacatttcttgtaaagcactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ataaacaaacaaacaaataaataaacaagtagacatcttcacatttcttgtaaagcactg 430
Query: 181 aactgatgaattacttcttaatatgtttttaaatgaattacaataaattttaggtgtatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aactgatgaattacttcttaatatgtttttaaatgaattacaataaattttaggtgtatg 370
Query: 241 ctgtttaaaatagactgaattattggaaatgtaattgaggaaaatacgtaataaaaaata 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 369 ctgtttaaaatagactgaattattggaaatgtaattgaggaaaatgcgtaataaaaaata 310
Query: 301 gactgaattttgtcaaaatttcaataattaaattaagatgcactcctcttccagtttcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gactgaattttgtcaaaatttcaataattaaattaagatgcactcctcttccagtttcct 250
Query: 361 ttaaaaacaaaacaaaacaacaacaacaacaacaaccaaacctcctagggatatctactg 420
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttaaaaacaaaacaa---aacaacaacaacaacaaccaaacctcctagggatatctactg 193
Query: 421 aacatagcacaaggcatgatgagactaggcacaaactcttatatcgatgctggatggggc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 aacatagcacaaggcatgatgagactaggcacaaactcttatatcgatgctggatggggc 133
Query: 481 aaccc 485
|||||
Sbjct: 132 aaccc 128
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
