BAC Information

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BAC

Clone NameMSMg01-358L18
Chromosome15 (Build37)
Map Location 32,095,543 - 32,096,016
singlet/doubletsinglet
Overlap genenone
Upstream geneDap, EG625796, 5730557B15Rik, Ropn1l, LOC622810, March6, Cmbl, Cct5, A930016P21Rik, LOC667231
Downstream geneTas2r119, 0610007N19Rik, Sema5a, LOC100040962, Sdc2, Pgcp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358L18.T7 (MSMg01no358_l18.b1)MSMg01-358L18.TJ (MSMg01no358_l18.g1)
ACCAG468320AG468321
length761741
length of high quality
(start - end)
451 (36 - 486)478 (64 - 541)
definitionCHROMAT_FILE: MSMg01no358_l18.b1 PHD_FILE: MSMg01no358_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:04 2005CHROMAT_FILE: MSMg01no358_l18.g1 PHD_FILE: MSMg01no358_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TCGGTTCTGAGCCCCATTTTTTAATGGGGTTGTTTGATTTTCTGAAGTCC
ACCTTCTTGAGTTATTTATATATGTTGGATATTAGTCCCCTATCTGATTT
AGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTTTGTCTTAT
TGATGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCAT
TTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAA
TTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTA
TAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATCCATTTAGAT
TTGACCTTAGTACAAGGAGATAGGTATGGATCGATTCGCATTCTTCTACA
TGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTCT
TCCACTGGATGGTTTTAGCTCCCTTGTCCGAGATCAAGTGACCATAAGTG
TGTGGGGTCCTTTTCTGGGGCCTTCATTTTATTTCCATTGGCTACTGGTC
TGGCCCCAATAACAGAACCATGCAGTTTTTTCCACAATTGTTTTTGTTTT
AAAATTTTTGTTTCGGCGTTGTGGTTTCCCCCCCAAAAGTCTTTTATTCT
TTGTATAGAAGTTTTGTTTTTTCTCACTTTTTTGTTTATTCCCAATAAAT
ATTTCAAAATN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTTCCTGTGGACCAGGTCTCAAATCCAATCGGAGAGC
AGGACAATGCTACTTTTTAAGTGTAATTTCCTCCCTGTGTGAAATATAAT
TCTGATGACCAGAAATCCTGGAGGTGAAGGGGATTGTGAGAGCTGCACAA
CATCAACCAGCAAGTCCTCAGGGTGAGGCTTTGGCTGTGTTTAATCCACA
CTTTGTTTTCTGCCTGTGGTTTAACACAGTGACTCCTAAGAATTACTTCC
TCCTACAACTGTGAAATAAATACTTTGGGCCATAAAAACAAGATGAGCTT
CAATCTACTTCAAGAGTAATTGTTGTCAGATAGATTTAAAGCCCATTATT
CTTTAGTCTAAAGCAGAAAGAAGCAAATATAACCAGAGATACTCAGCATT
GAAGTGCAGTGGGAAGAAGCTAAGACACAAGAGAGAAGAGGCATCGTAAT
TACACACACTTACATGGAAGCATCTACTTAGGAGCACTTACATGGGAGAA
TCTACATGGGAGAATCTACATGGGAGCAGCTCACACTCTCCTATTGATCT
GGATTGATGGGAACTGAAATTAAGGCCAATTTTTAGTTTCCAATAAGCTT
TTTAAAACCCCGGAAAGACCACGTTTCTTAGACGGGCCAACCTTTTCCAA
GGGCTTAAAAAAATGGGCCATTTTGTGTCTGGATGTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_l18.g1 MSMg01no358_l18.g1 CHROMAT_FILE:
MSMg01no358_l18.g1 PHD_FILE: MSMg01no358_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:05 2005
         (478 letters)



>mm_chr15_32095343_32096220
          Length = 878

 Score =  901 bits (466), Expect = 0.0
 Identities = 472/474 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcctgtggaccaggtctcaaatccaatcggagagcaggacaatgctactttttaagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 cttcctgtggaccaggtctcaaatccaatcggagagcaggacaatgctactttttaagtg 615

                                                                       
Query: 61  taatttcctccctgtgtgaaatataattctgatgaccagaaatcctggaggtgaagggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 taatttcctccctgtgtgaaatataattctgatgaccagaaatcctggaggtgaagggga 555

                                                                       
Query: 121 ttgtgagagctgcacaacatcaaccagcaagtcctcagggtgaggctttggctgtgttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ttgtgagagctgcacaacatcaaccagcaagtcctcagggtgaggctttggctgtgttta 495

                                                                       
Query: 181 atccacactttgttttctgcctgtggtttaacacagtgactcctaagaattacttcctcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 atccacactttgttttctgcctgtggtttaacacagtgactcctaagaattacttcctcc 435

                                                                       
Query: 241 tacaactgtgaaataaatactttgggccataaaaacaagatgagcttcaatctacttcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tacaactgtgaaataaatactttgggccataaaaacaagatgagcttcaatctacttcaa 375

                                                                       
Query: 301 gagtaattgttgtcagatagatttaaagcccattattctttagtctaaagcagaaagaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gagtaattgttgtcagatagatttaaagcccattattctttagtctaaagcagaaagaag 315

                                                                       
Query: 361 caaatataaccagagatactcagcattgaagtgcagtgggaagaagctaagacacaagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 314 caaatataaccagagatactcagcattgaagtgcagtgggaagaagctaaggcacaagag 255

                                                                 
Query: 421 agaagaggcatcgtaattacacacacttacatggaagcatctacttaggagcac 474
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 254 agaagaggcatcgtaattacacacacttacatggaagcatctacataggagcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)