Query= MSMg01no359_m10.b1 MSMg01no359_m10.b1 CHROMAT_FILE:
MSMg01no359_m10.b1 PHD_FILE: MSMg01no359_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:20 2005
(421 letters)
>mm_chr15_21368159_21368979
Length = 821
Score = 501 bits (259), Expect = e-146
Identities = 265/267 (99%)
Strand = Plus / Minus
Query: 5 gaattcattatgtcatctgttttaaccctaaagattgatacctactagagcttaaagtaa 64
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 471 gaattcattatgtcatctgttttaaccctaaggattgatacctactagagcttaaagtaa 412
Query: 65 tggactactgagggctatatgctaatagattatctccttggacaatgcacactagaacca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tggactactgagggctatatgctaatagattatctccttggacaatgcacactagaacca 352
Query: 125 agagacaattagaaaaacgagagagtgtaaaagctgtgtttaaactttagaccatgctac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 agagacaattagaaaaacgagagagtgtaaaagctgtgtttaaactttagaccatgctac 292
Query: 185 ttgggtagatttggttgctttcactgattctggagctacctctgacatcgaggttgttaa 244
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 291 ttgggtagatttggttgctttcactgattctggagctacctctgacatcaaggttgttaa 232
Query: 245 ttctgtttttacttctacccttttgcc 271
|||||||||||||||||||||||||||
Sbjct: 231 ttctgtttttacttctacccttttgcc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space: 334544
Effective search space used: 334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no359_m10.g1 MSMg01no359_m10.g1 CHROMAT_FILE:
MSMg01no359_m10.g1 PHD_FILE: MSMg01no359_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:20 2005
(440 letters)
>mm_chr15_21277171_21278010
Length = 840
Score = 803 bits (415), Expect = 0.0
Identities = 438/456 (96%), Gaps = 16/456 (3%)
Strand = Plus / Plus
Query: 1 aatagcaggaacacatgtgaatatgcaagtgaagaacctacccacaagattctcctgtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 aatagcaggaacacatgtgaatatgcaagtgaagaacctacccacaagattctcctgtgg 244
Query: 61 ccttcacaaacactatgtgtcaaacacacacacacacacacacacacacaca-------- 112
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ccttcacaaacactatgtgtcaaacacacacacacacacacacacacacacacacacaca 304
Query: 113 --------tgaacacatacatatgaacacacacatgcataaacacatataagcacacata 164
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cacacacatgaacacatacatatgaacacacacatgcataaacacatataagcacacata 364
Query: 165 tacacacttatgggcacacacaagacacacaaaggcacacaggcacactcacacacatga 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tacacacttatgggcacacacaagacacacaaaggcacacaggcacactcacacacatga 424
Query: 225 taaataaaatcaaaagtgaaaaacaagatcctgtcacctgagtcagaccttcaggaataa 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 taaataaaatcaaaagtgaaaaacaagatcctgtcacctgagtcagaccttcaggaataa 484
Query: 285 aggaagcagaccaacagtttcagttctggaccctcaaggtctgattgtgatttctttgtc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aggaagcagaccaacagtttcagttctggaccctcaaggtctgattgtgatttctttgtc 544
Query: 345 tccttcacatggtgatttggaccttggcgtctccttgcttcaatctttaaaaaagnatat 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 545 tccttcacatggtgatttggaccttggcgtctccttgcttcaatctttaaaaaagtatat 604
Query: 405 tttaaatattttgctaaaaattggtgaacaggtaga 440
||||||||||||||||| ||||||||||||||||||
Sbjct: 605 tttaaatattttgctaagaattggtgaacaggtaga 640
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space: 358161
Effective search space used: 358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
