BAC Information

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BAC

Clone NameMSMg01-359P11
Chromosome15 (Build37)
Map Location 99,730,876 - 99,731,224
singlet/doubletsinglet
Overlap genenone
Upstream geneLmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918
Downstream gene1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359P11.T7 (MSMg01no359_p11.b1)MSMg01-359P11.TJ (MSMg01no359_p11.g1)
ACCAG469255AG469256
length762854
length of high quality
(start - end)		352 (29 - 380)---
definitionCHROMAT_FILE: MSMg01no359_p11.b1 PHD_FILE: MSMg01no359_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:35 2005CHROMAT_FILE: MSMg01no359_p11.g1 PHD_FILE: MSMg01no359_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCATGTCTCCA
TGCTTTCAAGATAAGAATGTTTCTGTCTGTCTGGGCGTGGTGGCGCACGC
CTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGA
GGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGA
GAATTCCTGTCTCAAAAACCACACACACAAAAAAGAATGTTTCTGTCCTT
TGACTATGGAGAGACTGCCTTTCCACTGACAGTGTAGCTACTACTGTTGC
TCTGTTTGTATGTGCTGTTATTATTACTTATTATTATTACTAATTCTATT
GAATGTTTGGGTGGGTGTTGTGTCTGCATANATGTCTGCTCACCAACAAC
ATGCAGTTTCCAAGGAGGCCATATTTAGGCGTCTTCTGGGACCGCAATTA
TAACTGTTTGTCATGTGAATATAGGACACAGAACCCACCCCCTCTGTAAT
AGCTGCCTCCATTCTTATCATCTGATTCCCCCTANCTTCCCTTCCAATAC
TCTTTGTCCCTTATTATATTTTTTCCCCACCTCTGTTTGTTTTTCCTCTC
TCCCTTTCCCCTTCGTTTTCGCTCACGCCCCTTTCTTTCCCCTCCTTTTT
TTTTCTTTTCGCTATAATACTCTGTCTTCTCTTTTTTCTTCCCTCTTCTT
TCTTCTCCTTTTTTCTCCCTCTCTTTCTCTTCACCCCTTTTTTCTCCCCC
CCTTCTTTTTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXAAGACTAGCCTTGGCTACACNGGGAGTTCAAGGCCAACTGAG
CTATATGAGATTCCGTCGAAGGAAGGAAGGAAGGAAGGTCCGACCATGGT
TTGACCGATTGCCATCTTCCCCTTTTCCCCTCCCTTTCCTTTCTTCCCCC
TTTCTCCCTTTCTCTCTTCTCTCCCCTTCCCCTTTTTTTTCTCTTCCCTC
TCCTTTCTCCTCTCCTTCTCTTTCTTTCCCTTTCTTCCCTCTTTCTCTTC
TTTTTCTCTCTCTTCCTCCTCTTCTTTTTCCCTTTTTTCCCCCTCTTTTT
CCCCTTTCTTCCTTTTTTTTTTCCCCCCCTTTTTTTCCCTTTTCCCCCTT
CCCCTCCCCTTTTTCTCCCTTTTTCTCTTCTCCCCTTCCCTCCTCTCCCT
TTTTTCTTTTTTTCTCTCCTCCCCCTTTTTCTCCTTTCTTCCTCTCTCTT
CTCCCCTTTTCTCTCCCCCCCTCTCTTCTTTTCCCCCTCTCCCTCATTTT
TTCCCCCCTTTTCTTCTCCCCTTCCTTTCTTTCTCCCCCCTCTCTTTTCT
CTTCCCCCTTCTTCTTTCTTCTTTTCTTTCTCTCCTCCCCTCCCCTTTCT
CCCCTCTTTTCCTCCCCATCTTCTTTTCTTCCCTCCCCTCCTTTTCTCTT
CCCCTTTTTCCTTTTCCTCCTCCCTTACCTTCCCTCTCTCTCTTCTTTCT
CTTTCCTTCCCCTTTTCCTCTTTCCTTTTCTTTTTTCCCTCCTTCCTTTC
CTCCTACTTTTTTCTTTTTCTCTCACCCTTCTCCCTTTTCTTTTTCTCTC
CCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_p11.b1 MSMg01no359_p11.b1 CHROMAT_FILE:
MSMg01no359_p11.b1 PHD_FILE: MSMg01no359_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:35 2005
         (352 letters)



>mm_chr15_99730673_99731424
          Length = 752

 Score =  659 bits (341), Expect = 0.0
 Identities = 347/349 (99%), Gaps = 1/349 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcatgtctccatgctttcaa-gataagaatgtttctgtctgtctgggcgtggt 63
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcttcatgtctccatgctttcaaagataagaatgtttctgtctgtctgggcgtggt 263

                                                                       
Query: 64  ggcgcacgcctttaatcccagcacttgggaggcagaggcaggtggatttctgagttcgag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggcgcacgcctttaatcccagcacttgggaggcagaggcaggtggatttctgagttcgag 323

                                                                       
Query: 124 gccagcctggtctacagagtgagttccaggacagccagggctacacagagaattcctgtc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gccagcctggtctacagagtgagttccaggacagccagggctacacagagaattcctgtc 383

                                                                       
Query: 184 tcaaaaaccacacacacaaaaaagaatgtttctgtcctttgactatggagagactgcctt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcaaaaaccacacacacaaaaaagaatgtttctgtcctttgactatggagagactgcctt 443

                                                                       
Query: 244 tccactgacagtgtagctactactgttgctctgtttgtatgtgctgttattattacttat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 444 tccactgacagtgtagctactactgttgctctgtttgtatgtgctgttattattagttat 503

                                                            
Query: 304 tattattactaattctattgaatgtttgggtgggtgttgtgtctgcata 352
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tattattactaattctattgaatgtttgggtgggtgttgtgtctgcata 552


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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