BAC Information

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BAC

Clone NameMSMg01-360E19
Chromosome15 (Build37)
Map Location 74,834,725 - 74,835,267
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040966, EG666113, LOC100041307, LOC100040984, Bai1, 1700016M24Rik, Arc, Jrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a
Downstream geneLy6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644, LOC100041087, BC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik, Ly6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3, LOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl, Tsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360E19.T7 (MSMg01no360_e19.b1)MSMg01-360E19.TJ (MSMg01no360_e19.g1)
ACCAG469508AG469509
length742764
length of high quality
(start - end)		549 (47 - 595)432 (75 - 506)
definitionCHROMAT_FILE: MSMg01no360_e19.b1 PHD_FILE: MSMg01no360_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:00 2005CHROMAT_FILE: MSMg01no360_e19.g1 PHD_FILE: MSMg01no360_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:01 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTATCCCATGCTCCTGTGTTTGCATTCCTCTGTTTTGTGTAAGGA
TCCAGTAACCTCTTTGTACCTTGCAAGTGTGTCACCCAACTTCCCTATTT
TCTTCTGTATAAAAAGTTTGATGCTCGATTTGACAAATTACATTCAGATT
CTACACAACCTCTCCTGTGTGCATCTGTCTGTCATTCCATCCAACACTTT
GCCCACCTGCCCCAGAGACCCATTCCACGCAGACAAAGGGATCCAGAGGG
TCAGCGGCAGAAAACCCAGTTTATTTTTTCTGTTGTGGACAGCCCAGGTC
ATTGTGACCATGCTTTCTACATGTATAATAATCTACCAAAATTAATTTTC
CTATAACTGTGCCAATCAGTTCTGAAAATCCTGATCTGACAATGTGGTCA
AATAAATCACCTCTTAAGCTTTGGGCAGATCTCTGTCAAATCTGCTTTGT
AATACTGACAACACTACAAAGGTGATTTTACAGCCTGTGAGTGTGGGAAG
TTGATATTGTCATGGGCTTTGCTTCAGTTTCTTAGGAGGCTAANAGTCTG
GCTGATTCCCTAGAAACTATTAGCAAGTATCTTACAAAAAACAAGATTTT
TTAAAAAGATTTATTTATTTATTATATNTAAATACACTGTATCTGTTTTC
AGACACACCAAAAAAGGCATTCGATCTTATTACAGATGGTTN

CGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACATTGGTTCCCTGACCTGTGGAG
TGAGGGCTATTACGGTTGGAAGGACTAAATGGATGTCTTTAGAGTTGCCT
CTGCCTAAGAAAATAGTGAATCAAAACCAATATCATATTCCTGGAAAAAT
TGCAGAAATTAGTGCCATTATCAAGGACTTGAAAGATGTTCCCACCATAT
CTCTCTTATCTGGCCAGAGCATTAGACAGGTGGATTATGGAGAATGGGAA
AACTAAATCAGGTATTGACTGCAATTGAATCTACTGTACCAGATGTAGTT
TTATTACTTGAGCAAAATAACACAACTCCTGGTACCTGATATACAGCTAT
TGATCTAGCAAATGCCTTCTTCTCAGAACCTGTCCCTAAGGACCACCAGA
AGCAATTAGCTTTCAGTTGGCAAGGCCAGCAGTTAGACCTTTACAGTTTA
GCCTCAAGGATATAGTAACTTTCCTGCCCTGTATCATAACTTAGTAAGAA
GAGATCTTGACCCTTTGTCTCCTCTACAAAATATCACTTTGGGGCCCTAT
ATTGATGACATTATGCTGATTGGAACACGTGGAAAAACAGGAACTACCCC
TTTGTATCCCTTGGATAACCTATGGTTATTTTAGGATGGGGAAAAAAATC
CACCCCAATTCTGGGGTTTCCCTTCTCCCCGAAAATTTTCCTGAATCCCC
TGGTTGGCGAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_e19.b1 MSMg01no360_e19.b1 CHROMAT_FILE:
MSMg01no360_e19.b1 PHD_FILE: MSMg01no360_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:00 2005
         (549 letters)



>mm_chr15_74834521_74835469
          Length = 949

 Score = 1027 bits (531), Expect = 0.0
 Identities = 540/543 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatcccatgctcctgtgtttgcattcctctgttttgtgtaaggatccagtaacc 64
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatcccaggttcctgtgtttgcattcctctgttttgtgtaaggatccagtaacc 264

                                                                       
Query: 65  tctttgtaccttgcaagtgtgtcacccaacttccctattttcttctgtataaaaagtttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctttgtaccttgcaagtgtgtcacccaacttccctattttcttctgtataaaaagtttg 324

                                                                       
Query: 125 atgctcgatttgacaaattacattcagattctacacaacctctcctgtgtgcatctgtct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgctcgatttgacaaattacattcagattctacacaacctctcctgtgtgcatctgtct 384

                                                                       
Query: 185 gtcattccatccaacactttgcccacctgccccagagacccattccacgcagacaaaggg 244
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 385 gtcattccatccaacactttgcccacctgccccagagacccattccatgcagacaaaggg 444

                                                                       
Query: 245 atccagagggtcagcggcagaaaacccagtttattttttctgttgtggacagcccaggtc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atccagagggtcagcggcagaaaacccagtttattttttctgttgtggacagcccaggtc 504

                                                                       
Query: 305 attgtgaccatgctttctacatgtataataatctaccaaaattaattttcctataactgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attgtgaccatgctttctacatgtataataatctaccaaaattaattttcctataactgt 564

                                                                       
Query: 365 gccaatcagttctgaaaatcctgatctgacaatgtggtcaaataaatcacctcttaagct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gccaatcagttctgaaaatcctgatctgacaatgtggtcaaataaatcacctcttaagct 624

                                                                       
Query: 425 ttgggcagatctctgtcaaatctgctttgtaatactgacaacactacaaaggtgatttta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgggcagatctctgtcaaatctgctttgtaatactgacaacactacaaaggtgatttta 684

                                                                       
Query: 485 cagcctgtgagtgtgggaagttgatattgtcatgggctttgcttcagtttcttaggaggc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cagcctgtgagtgtgggaagttgatattgtcatgggctttgcttcagtttcttaggaggc 744

              
Query: 545 taa 547
           |||
Sbjct: 745 taa 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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