BAC Information

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BAC

Clone NameMSMg01-360F18
Chromosome15 (Build37)
Map Location 82,622,194 - 82,798,675
singlet/doubletdoublet
Overlap geneCyp2d26, Tcf20
Upstream geneZc3h7b, Tef, LOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300
Downstream geneNfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3, Pacsin2, LOC414359, Ttll1, Bik, Mcat, Tspo, Ttll12, Scube1, Mpped1, 4931407K02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360F18.T7 (MSMg01no360_f18.b1)MSMg01-360F18.TJ (MSMg01no360_f18.g1)
ACCAG469553AG469554
length775769
length of high quality
(start - end)		455 (45 - 499)197 (75 - 271)
definitionCHROMAT_FILE: MSMg01no360_f18.b1 PHD_FILE: MSMg01no360_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:05 2005CHROMAT_FILE: MSMg01no360_f18.g1 PHD_FILE: MSMg01no360_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,622,194 - 82,622,644)(82,798,501 - 82,798,675)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCTTGTCCAAGGCTTTGTCAGGCAAACCAGGGATGTGTAGTAGCA
TTGGGATGGCGTTCAGCACCTGTGAAAGAAACAAAACAGGTCCAGTTGCT
TTTCTTTCTAATTAAGAATTCATAATTTTGTGTGCCAGTGTGTGTGCACA
TGCATGTACACACATGTGCTTGCCTGTATATAGTGACTCATGTTTTGTCA
TTAGAGAACAACTTATAGAGTAAGTTTTATCCCTTATATGGGACTCAGGG
ATCCAGCTCAGGGCTCCATTCTTGCTTGGTAAGCTCATTTACCCACTGAC
CATCTAGCTCTTTTGCTCCCGGGGGCTGTTTCTGCTCAGTGTTTACCTGG
ACCAGTCACAGTTCTCAGCCTCTTCCACAATGGACTCAGAATCTGTCCCT
ACCCATCACCTGCTTCTTCCCCAGTTCTAGCCTGCATGCTCTCCTGTAGC
TCAGGGTGAAGATAAGAAATACTCTGCCCTTCAATATAACAGGCTTGTGT
GGTTTCCCTGCAAGCTCACCCCCTTTCTAGAGCCATTAACCTTGGGCTGC
TCCTCCCCCCCACTTATCTGGAGGGTTGGCAACACCCCAAGCCTTTCTTC
CCTGCACTTGGGCATCACAACAAGCCCCACCCACCCCGAAATTTATAATT
ATTCCGGAGAAAATTATTACCTAAAAAAGTGGTGTGGGCCCCTTGCTTCC
CAAACCATATCACTCTCTTCAAAAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAGGTTACATCTGAGGGAGCATGTGT
CACCAAACAGCAAAAGAATGAGCAGTGAGCCAGAAAACTGCCCAAGTTCT
CCCTGCTGGTCCAAGAAGCCCCGTTGCACTGGGGAGTAGCTTCCTGACTA
CTGAGTGGGAGGGAAGCCCCTGAGGTGCCCTTCCTCAGTTCTGCTGCTGC
AGGGTGGGGGTTGGGGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTTTTTTTTTTTNNTNNNNNNNNNNTTTNTTNNTTTN
TNTTTTTTTNTTTTTTTTTTTTTTAATTTTTTTTNTTTTTTTTTTTTTNT
TTTTTTCCCTCTNTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTNTT
TTTTTTTTTTTTTNTTTTTTTTTTTTTTTNNNNTTTTTTTTTTTTTTTTT
TTTTTNTNNNTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNTTTT
TTTTTTTTTTTTTTTTTNNNTTTTTNTTTTTTTNTTTTTTTTTNTTTTTN
TTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTNNNNTNTTTTTTTTTTTT
NNTTTTTTTTTTTTNNNNNNNTTTNTTTATTTTTTTTTNTNNNTTTTTTT
TTTTTTTNTTTNNTTNNNNNTTTTTTNCTTTTCNTTTTTCCCTTTTTTCT
TCTTTTTTCTTTTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_f18.b1 MSMg01no360_f18.b1 CHROMAT_FILE:
MSMg01no360_f18.b1 PHD_FILE: MSMg01no360_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:05 2005
         (455 letters)



>mm_chr15_82621990_82622844
          Length = 855

 Score =  795 bits (411), Expect = 0.0
 Identities = 441/451 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagcttgtccaaggctttgtcaggcaaaccagggatgtgtagtagcattgggatg 64
           ||||||||||||   |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcttggggaaggctttatcaggcaaaccagggatgtgtagtagcattgggatg 264

                                                                       
Query: 65  gcgttcagcacctgtgaaagaaacaaaacaggtccagttgcttttctttctaattaagaa 124
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcattcagcacctgtgaaagaaacaaaacaggtccagttgcttttctttctaattaagaa 324

                                                                       
Query: 125 ttcataattttgtgtgccagtgtgtgtgcacatgcatgtacacacatgtgcttgcctgta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcataattttgtgtgccagtgtgtgtgcacatgcatgtacacacatgtgcttgcctgta 384

                                                                       
Query: 185 tatagtgactcatgttttgtcattagagaacaacttatagagtaagttttatcccttata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatagtgactcatgttttgtcattagagaacaacttatagagtaagttttatcccttata 444

                                                                       
Query: 245 tgggactcagggatccagctcagggctccattcttgcttggtaagctcatttacccactg 304
           ||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 445 tgggactcaggaatccagctcagggctccaggcttgcttggtaagctcatttacccactg 504

                                                                       
Query: 305 accatctagctcttttgctcccgggggctgtttctgctcagtgtttacctggaccagtca 364
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 accatctagctcttttgcccccgggggctgtttctgctcagtgtttacctggaccagtca 564

                                                                       
Query: 365 cagttctcagcctcttccacaatggactcagaatctgtccctacccatcacctgcttctt 424
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagttctcagcctcttccgcaatggactcagaatctgtccctacccatcacctgcttctt 624

                                          
Query: 425 ccccagttctagcctgcatgctctcctgtag 455
           |||||||||||||||||||||||||||||||
Sbjct: 625 ccccagttctagcctgcatgctctcctgtag 655


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no360_f18.g1 MSMg01no360_f18.g1 CHROMAT_FILE:
MSMg01no360_f18.g1 PHD_FILE: MSMg01no360_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:05 2005
         (197 letters)



>mm_chr15_82798280_82798876
          Length = 597

 Score =  339 bits (175), Expect = 1e-97
 Identities = 175/175 (100%)
 Strand = Plus / Minus

                                                                       
Query: 22  tgtgtcaccaaacagcaaaagaatgagcagtgagccagaaaactgcccaagttctccctg 81
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tgtgtcaccaaacagcaaaagaatgagcagtgagccagaaaactgcccaagttctccctg 337

                                                                       
Query: 82  ctggtccaagaagccccgttgcactggggagtagcttcctgactactgagtgggagggaa 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ctggtccaagaagccccgttgcactggggagtagcttcctgactactgagtgggagggaa 277

                                                                  
Query: 142 gcccctgaggtgcccttcctcagttctgctgctgcagggtgggggttggggttgg 196
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gcccctgaggtgcccttcctcagttctgctgctgcagggtgggggttggggttgg 222


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 597
Length adjustment: 8
Effective length of query: 189
Effective length of database: 589
Effective search space:   111321
Effective search space used:   111321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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