BAC Information

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BAC

Clone NameMSMg01-360L05
Chromosome15 (Build37)
Map Location 47,593,139 - 47,745,612
singlet/doubletdoublet
Overlap geneCsmd3
Upstream geneLOC100039438, LOC665130, LOC100039485, LOC100039493
Downstream geneEG665146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360L05.T7 (MSMg01no360_l05.b1)MSMg01-360L05.TJ (MSMg01no360_l05.g1)
ACCAG469813AG469814
length743741
length of high quality
(start - end)		534 (48 - 581)487 (78 - 564)
definitionCHROMAT_FILE: MSMg01no360_l05.b1 PHD_FILE: MSMg01no360_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:31 2005CHROMAT_FILE: MSMg01no360_l05.g1 PHD_FILE: MSMg01no360_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,593,139 - 47,593,667)(47,745,126 - 47,745,612)
sequence
TTATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCG
CGGAATTCTCAGGACTTACCAACCATCAGCCTGTAAACATGCTGAGTTGC
CTGGAGTATAATGCAATACAATAAAATGGGCTACTGACCACAGGAGTGTG
CATTTGCTTAGAACACAAAAAGGGAAAAGAAAAATGTGAAGCTCATCTTT
CCACTAAATTCTACTTTGCAATATTGCTAGCATGTCCCATCCTTGGTAGC
AAACATCTTCATGGGCAAACTTTGATCAAGTCTCACTGAATCCTCTAATG
AGAGCTTGATCTTAATAAAAATCTATCCGTTTGGTTTATCCCCTCTTACC
CTCAATATCTGATCACCATTTCAACCCTGCTGTCAGTTCAGTGGTATTTG
TTCATCTTATTTCTTCAGCAACCCATGTGTATTGGCTTAGCGTGGCCATT
TAATAGTTTCTTATGTTTTTCACTATTAGTGTTTTTCCTTAAATTCTCAT
CTCGTTACTTGGCTGTGGGTTCCCATATGTCCATGCATTTTAATTTGAGC
TTAATCTCTCTACCTAACAGCAAAACTCTATTGTAATAATTTTTAAAATA
TGTTGATAATCTTGAATAATTTGGATTTCCTCCATTATTTATGAATATGT
GCGCCGGGACCATTATTGGAAATCAATTTGCAGAAAACGTGAATCCCCCT
TCCTGGCATGAAGGACCCACAAATAAAAGAGGCGGTTTATTCC

NACGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCTCTCCAAATTACCCACTG
AACTATGAAAACAACCACGAATGCATTTACAGCCTTCAGGTCCAAGCAGG
AAAAGGCATCAATATTTCAGCCAGAACGTTTCATTTAGCTCAAGGGGATG
TTCTTAAGGTAAGTGGACCACTGTGATATAGTTTGATCATTAATTACACT
TTCCTAAATAGGTTTGCATTAAATTGTACATGTAATAAAATGTAAGTTCA
TTTTCCCTTTCAAACATAACATTCCCAGTGATCTTGTATTTGAAATAATA
TTTTGTTTCTAGTGCTTTTTTATGATTAAAAAAAATCACAGATTTTATAT
TTAAGTATTTGTTTGACAATAACTAAGATAATGAAACTTTTATGCAAAAT
ACCTCATTCAATAAAAATTTGGTATTTTAAAACTAATGTATGACTGACCA
TTTTATTAAGACAAATTATAAATTATAATGATAACTTGTTTTATAACATA
AGCTTTGGTATTGTTAATAAATGATGGTTTGTGTTCTAACTCAGATATCT
ACTATTGTAAACTATTCTTTATTACCTATAAAGAACTTCTAAAATTTATG
ATACAGGCCCAGTTACCCAATAGTTATACCAATTATTTAAACCTAGCAAT
CCATGGGCTAAAACCAAATAAAACATTTTTATAATGGTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_l05.b1 MSMg01no360_l05.b1 CHROMAT_FILE:
MSMg01no360_l05.b1 PHD_FILE: MSMg01no360_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:31 2005
         (534 letters)



>mm_chr15_47592934_47593867
          Length = 934

 Score =  984 bits (509), Expect = 0.0
 Identities = 524/529 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctcaggacttaccaaccatcagcctgtaaacatgctgagttgcctggagtataat 65
           |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctcaggacagagcaaccatcagcctgtaaacatgctgagttgcctggagtataat 265

                                                                       
Query: 66  gcaatacaataaaatgggctactgaccacaggagtgtgcatttgcttagaacacaaaaag 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gcaatacaataaaatgggctactgaccacaggagtgtgcatttgcttagaacacaaaaag 325

                                                                       
Query: 126 ggaaaagaaaaatgtgaagctcatctttccactaaattctactttgcaatattgctagca 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ggaaaagaaaaatgtgaagctcatctttccactaaattctactttgcaatattgctagca 385

                                                                       
Query: 186 tgtcccatccttggtagcaaacatcttcatgggcaaactttgatcaagtctcactgaatc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgtcccatccttggtagcaaacatcttcatgggcaaactttgatcaagtctcactgaatc 445

                                                                       
Query: 246 ctctaatgagagcttgatcttaataaaaatctatccgtttggtttatcccctcttaccct 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ctctaatgagagcttgatcttaataaaaatctatccgtttggtttatcccctcttaccct 505

                                                                       
Query: 306 caatatctgatcaccatttcaaccctgctgtcagttcagtggtatttgttcatcttattt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 caatatctgatcaccatttcaaccctgctgtcagttcagtggtatttgttcatcttattt 565

                                                                       
Query: 366 cttcagcaacccatgtgtattggcttagcgtggccatttaatagtttcttatgtttttca 425
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 566 cttcagcaacccatgtgtattggcttagcctggccatttaatagtttcttatgtttttca 625

                                                                       
Query: 426 ctattagtgtttttccttaaattctcatctcgttacttggctgtgggttcccatatgtcc 485
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ctattagtgtttttccttcaattctcatctcgttacttggctgtgggttcccatatgtcc 685

                                                            
Query: 486 atgcattttaatttgagcttaatctctctacctaacagcaaaactctat 534
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 atgcattttaatttgagcttaatctctctacctaacagcaaaactctat 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no360_l05.g1 MSMg01no360_l05.g1 CHROMAT_FILE:
MSMg01no360_l05.g1 PHD_FILE: MSMg01no360_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:31 2005
         (487 letters)



>mm_chr15_47744926_47745812
          Length = 887

 Score =  934 bits (483), Expect = 0.0
 Identities = 486/487 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctctctccaaattacccactgaactatgaaaacaaccacgaatgcatttacagccttc 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tcctctctccaaattacccattgaactatgaaaacaaccacgaatgcatttacagccttc 628

                                                                       
Query: 61  aggtccaagcaggaaaaggcatcaatatttcagccagaacgtttcatttagctcaagggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aggtccaagcaggaaaaggcatcaatatttcagccagaacgtttcatttagctcaagggg 568

                                                                       
Query: 121 atgttcttaaggtaagtggaccactgtgatatagtttgatcattaattacactttcctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 atgttcttaaggtaagtggaccactgtgatatagtttgatcattaattacactttcctaa 508

                                                                       
Query: 181 ataggtttgcattaaattgtacatgtaataaaatgtaagttcattttccctttcaaacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ataggtttgcattaaattgtacatgtaataaaatgtaagttcattttccctttcaaacat 448

                                                                       
Query: 241 aacattcccagtgatcttgtatttgaaataatattttgtttctagtgcttttttatgatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aacattcccagtgatcttgtatttgaaataatattttgtttctagtgcttttttatgatt 388

                                                                       
Query: 301 aaaaaaaatcacagattttatatttaagtatttgtttgacaataactaagataatgaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aaaaaaaatcacagattttatatttaagtatttgtttgacaataactaagataatgaaac 328

                                                                       
Query: 361 ttttatgcaaaatacctcattcaataaaaatttggtattttaaaactaatgtatgactga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttttatgcaaaatacctcattcaataaaaatttggtattttaaaactaatgtatgactga 268

                                                                       
Query: 421 ccattttattaagacaaattataaattataatgataacttgttttataacataagctttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ccattttattaagacaaattataaattataatgataacttgttttataacataagctttg 208

                  
Query: 481 gtattgt 487
           |||||||
Sbjct: 207 gtattgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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