BAC Information

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BAC

Clone NameMSMg01-360P18
Chromosome15 (Build37)
Map Location 18,579,184 - 18,762,578
singlet/doubletdoublet
Overlap geneCdh10
Upstream geneLOC100040162, LOC666835, LOC666839
Downstream geneEG666857, EG666875, LOC621884, LOC100040265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360P18.T7 (MSMg01no360_p18.b1)MSMg01-360P18.TJ (MSMg01no360_p18.g1)
ACCAG470027AG470028
length735747
length of high quality
(start - end)		567 (39 - 605)533 (73 - 605)
definitionCHROMAT_FILE: MSMg01no360_p18.b1 PHD_FILE: MSMg01no360_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:53 2005CHROMAT_FILE: MSMg01no360_p18.g1 PHD_FILE: MSMg01no360_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,762,023 - 18,762,578)(18,579,184 - 18,579,716)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG
AATTCACTGCTTCTCCACTCCTAATTCCTAAGGCTAACAATCCTTTCTCT
ACTCTGATGTCCTACAAACCAGATGAATATTTGCACTGAAAAGCTTTAAA
ACTTTAAATACTTAAGGTACGTTTTCTGCTTAGTTTTAGGTGTAAAATTA
AATTATCTTTTAATTTAAAATTTCTGCTGCATCCAAAAATGTTATATTCT
GGAATCACCCATAGCCAATCCCCATTTATAGCCCTTAACACGAATCCAGA
CCGATTTCAAAACTGTGAAGATAATTGTTAACCTGAAAAAGTCTTACACA
AGGACCTTGCTCTAGTTAGCACAGAATGGCCACTAGGTGGCCCCAAACAC
CAATATGTGTCACTCAAGAGATGAATGGAAATTTGCCAAAGGTATTAGCT
GCAGTCTACCTCATAAATGGGTCAAGACTTCAAGAATGTGAACTCATCTC
AACCCTATGATCATTTTCACGTGTAATTTGTGCGTTTCTAAACTGAATAC
ACTCACAACAACATATCANATACTTGCACACCTTTACAAATTTTGAAGGA
ATTTTGACAAGAATTCTTTCAGTCTTCCTTTCTAACAGTTCAATTATATT
TGTTTTCTCAAGGTTTTATAATATCTCCACTAATATTCCCCCATTTTCTC
CTCCTTTTTCTTTCCAATTATATGAAACGAAAATC

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGTGTGAACAGCTCCCCCACCCCCATA
TATAAGTTTTGTGACCTTAGTTTCTTCAAAGCATGAAACTGTTCTTGGAC
TGCTTTTGTGTGATTTTTTCCAGCTATAGCATATATGAATTATTTTATTT
CCTTTTAGCCTTTATCACTGGCTATAGTTATTGTTTTTATGGAAATGCAG
AAAACAAACTTTTGTCACATAAGGCTTCCTGTTATGATTGTACAATTTAC
TCACATGACTCTTTTTAACCCTCAGAGTAAAAATGATCTGATGCTGTGAA
TAAAGTAGACTATTGTGTGAAGCTTTAGTCTTACTCATTTTTGAATTCCA
TTATTTCAGATCGCACCACCTCTAGAGTGGTGAACAGAGTCATCCTGAGC
AGGAAGCTGCAGGTGCTTCTGAAATAAGAGAATGGGGATCCCACAGAATG
ATGAGTCAGACTAATAGAGCAGAGACCAGGCAAGGCTTTGCCTTGTGTCC
AGCTGGTGCATCTTATTTTAAAGAAATGGGGAGCACATGGATTCCAAAAA
CAACTATTAGACTGCTTAGAAATTACTTGTAGGGAATGCTAGGGTAAGGA
GGTGGGATTGTTTTGATTGNNTTTATTTNTTTTTNTTTTCTTTNNNTTTT
TTNNGTTTTNTTATNTCTNTTTTTTNNTTNATTTTNTTTNTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_p18.b1 MSMg01no360_p18.b1 CHROMAT_FILE:
MSMg01no360_p18.b1 PHD_FILE: MSMg01no360_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:53 2005
         (567 letters)



>mm_chr15_18761637_18762603
          Length = 967

 Score = 1031 bits (533), Expect = 0.0
 Identities = 550/556 (98%)
 Strand = Plus / Minus

                                                                       
Query: 12  gaattcactgcttctccactcctaattcctaaggctaacaatcctttctctactctgatg 71
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 gaattcactgcttcagcactcctaattcctaaggctaacaatcctttctctactctgatg 883

                                                                       
Query: 72  tcctacaaaccagatgaatatttgcactgaaaagctttaaaactttaaatacttaaggta 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 tcctacaaaccagatgaatatttgcactgaaaagctttaaaactttaaatacttaaggta 823

                                                                       
Query: 132 cgttttctgcttagttttaggtgtaaaattaaattatcttttaatttaaaatttctgctg 191
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 822 cgttttctgcttagttttaggtgtaaaattaaattatcttttaatttaaaatttatgctg 763

                                                                       
Query: 192 catccaaaaatgttatattctggaatcacccatagccaatccccatttatagcccttaac 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 catccaaaaatgttatattctggaatcacccatagccaatccccatttatagcccttaac 703

                                                                       
Query: 252 acgaatccagaccgatttcaaaactgtgaagataattgttaacctgaaaaagtcttacac 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 acgaatccagaccgatttcaaaactgtgaagataattgttaacctgaaaaagtcttacac 643

                                                                       
Query: 312 aaggaccttgctctagttagcacagaatggccactaggtggccccaaacaccaatatgtg 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 aaggaccttgctctagttagcacagaatggccactaggtggccccaaacaccaatatgtg 583

                                                                       
Query: 372 tcactcaagagatgaatggaaatttgccaaaggtattagctgcagtctacctcataaatg 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tcactcaagagatgaatggaaatttgccaaaggtattagctgcagtctacctcataaatg 523

                                                                       
Query: 432 ggtcaagacttcaagaatgtgaactcatctcaaccctatgatcattttcacgtgtaattt 491
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ggtcaagacttcaagaatgtgaactcatctcaaccctatgatcattttcacgtgtaattt 463

                                                                       
Query: 492 gtgcgtttctaaactgaatacactcacaacaacatatcanatacttgcacacctttacaa 551
           |||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 462 gtgcgtctctaaactgaatacactcacaacaacttatcaaatacttgcacacctttacaa 403

                           
Query: 552 attttgaaggaatttt 567
           ||||||||||||||||
Sbjct: 402 attttgaaggaatttt 387


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no360_p18.g1 MSMg01no360_p18.g1 CHROMAT_FILE:
MSMg01no360_p18.g1 PHD_FILE: MSMg01no360_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:53 2005
         (533 letters)



>mm_chr15_18578984_18579916
          Length = 933

 Score = 1007 bits (521), Expect = 0.0
 Identities = 530/533 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtgtgaacagctcccccacccccatatataagttttgtgaccttagtttcttcaaagc 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtatgaacagctcccccacccccatatataagttttgtgaccttagtttcttcaaagc 260

                                                                       
Query: 61  atgaaactgttcttggactgcttttgtgtgattttttccagctatagcatatatgaatta 120
           ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 261 atgaaactgttcttggactgcttttgtgtgattttttccaggtataacatatatgaatta 320

                                                                       
Query: 121 ttttatttccttttagcctttatcactggctatagttattgtttttatggaaatgcagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttatttccttttagcctttatcactggctatagttattgtttttatggaaatgcagaa 380

                                                                       
Query: 181 aacaaacttttgtcacataaggcttcctgttatgattgtacaatttactcacatgactct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacaaacttttgtcacataaggcttcctgttatgattgtacaatttactcacatgactct 440

                                                                       
Query: 241 ttttaaccctcagagtaaaaatgatctgatgctgtgaataaagtagactattgtgtgaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttaaccctcagagtaaaaatgatctgatgctgtgaataaagtagactattgtgtgaag 500

                                                                       
Query: 301 ctttagtcttactcatttttgaattccattatttcagatcgcaccacctctagagtggtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttagtcttactcatttttgaattccattatttcagatcgcaccacctctagagtggtg 560

                                                                       
Query: 361 aacagagtcatcctgagcaggaagctgcaggtgcttctgaaataagagaatggggatccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacagagtcatcctgagcaggaagctgcaggtgcttctgaaataagagaatggggatccc 620

                                                                       
Query: 421 acagaatgatgagtcagactaatagagcagagaccaggcaaggctttgccttgtgtccag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acagaatgatgagtcagactaatagagcagagaccaggcaaggctttgccttgtgtccag 680

                                                                
Query: 481 ctggtgcatcttattttaaagaaatggggagcacatggattccaaaaacaact 533
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctggtgcatcttattttaaagaaatggggagcacatggattccaaaaacaact 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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