Query= MSMg01no361_l19.b1 MSMg01no361_l19.b1 CHROMAT_FILE:
MSMg01no361_l19.b1 PHD_FILE: MSMg01no361_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:52 2005
(532 letters)
>mm_chr15_26704672_26705604
Length = 933
Score = 855 bits (442), Expect = 0.0
Identities = 508/530 (95%), Gaps = 3/530 (0%)
Strand = Plus / Plus
Query: 5 gaattc-acaagctttgagtccaacattagcacactcagaactggtagcttcagaatttg 63
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 205 gaattcaacaagctttgagtccaacattagcacacccagaactggtagcttcagaatttg 264
Query: 64 tacatgctgctgcaaacagatatatcagagggtacccagaaaaaaa-ccaaaacaaataa 122
|||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||
Sbjct: 265 tacatgctgctgcaaacagatatatcagagtgtacccag-aaaaaaaccaaaacaaataa 323
Query: 123 acaaaccaacaaaaacaacggcagcttctcttcatcaagcacactgcttccagttggaat 182
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 324 acaaaccaacaaaaacaacggcagcttctcttcatcaagcacactgctcccagttggaat 383
Query: 183 tgaggctgttctcaaacaatgaccttgactggcatatgcagcagtccaggtcttctatct 242
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgaggctgttctaaaacaatgaccttgactggcatatgcagcagtccaggtcttctatct 443
Query: 243 ataggtctctcccattttcaagatgctctttcccctgaaacatgaataatagcatctgtc 302
|||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 444 ataggtatctcccattctcaagatgctctttaccctgaaacatgaataatagcatctgtc 503
Query: 303 atgttcactaaatgtctgcgtgggcaactgataggagaaagatatatgccagactagcag 362
| ||||||||||||||| ||| |||||| ||| ||||||||||||| |||||||||||
Sbjct: 504 acattcactaaatgtctgtgtgtgcaacttatactagaaagatatatggcagactagcag 563
Query: 363 agtagatatgggctgccacctccatcatatgcccaggaccaaccctatgaatttgggttt 422
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 564 agtagatacgggctgccacctccatcatatgcccaggaccaaccctatgaacctgggttt 623
Query: 423 gaaattggctcatggactagataatttgtgcttcaaatgtagcccacatttttctgattc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaaattggctcatggactagataatttgtgcttcaaatgtagcccacatttttctgattc 683
Query: 483 taggacatcctttgttactacttcatcactttgggcagcttcatgaaagt 532
||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 taggaaatcctttgttactacttcatcactttgggcagcttcatgaaagt 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 933
Length adjustment: 10
Effective length of query: 522
Effective length of database: 923
Effective search space: 481806
Effective search space used: 481806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no361_l19.g1 MSMg01no361_l19.g1 CHROMAT_FILE:
MSMg01no361_l19.g1 PHD_FILE: MSMg01no361_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:52 2005
(485 letters)
>mm_chr15_26819278_26820165
Length = 888
Score = 905 bits (468), Expect = 0.0
Identities = 482/488 (98%), Gaps = 3/488 (0%)
Strand = Plus / Minus
Query: 1 catcgtgatgcaaatcagcagagaagggatagtgttgcagggcttgggtaaagtaaaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 catcgtgatgcaaatcagcagagaagggatagtgttgcagggcttgggtaaagtaaaagc 629
Query: 61 atctgtgctgtgctgctgacaataccatgtttggtctacggtgagcagtagttggagaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 atctgtgctgtgctgctgacaataccatgtttggtctacggtgagcagtagttggagaga 569
Query: 121 attggaga---tttttttttttttgcacatttaaaatacagatgtaaaaagagaggtggc 177
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 attggagattttttttttttttttgcacatttaaaatacagatgtaaaaagagaggtggc 509
Query: 178 tttctttccacgttgagaatcaactctttcagctctgttttaactctttgtaccactgac 237
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 508 tttctttccacgttgagaatcaactctttcggctctgttttaactctttgtactactgac 449
Query: 238 gagaacataccgacaattgattttgagtacttaagatcccgtatctcctgttatctctgg 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gagaacataccgacaattgattttgagtacttaagatcccgtatctcctgttatctctgg 389
Query: 298 gttttggctacctgttggagtagtagacacttctcaaggtggtatatatgttatagtact 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gttttggctacctgttggagtagtagacacttctcaaggtggtatatatgttatagtact 329
Query: 358 agaataaagtctctggtcactgtattctcccagtgaaaggtaagagcttccttcatggag 417
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 agaataaagtctctggtcaatgtattctcccagtgaaaggtaagagcttccttcatggag 269
Query: 418 cttagaatcctcctcacacattaaatgtcatgcccaaagaggtgccttgacgaaattcaa 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cttagaatcctcctcacacattaaatgtcatgcccaaagaggtgccttgacgaaattcaa 209
Query: 478 gtttcagt 485
||||||||
Sbjct: 208 gtttcagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 888
Length adjustment: 10
Effective length of query: 475
Effective length of database: 878
Effective search space: 417050
Effective search space used: 417050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
