BAC Information

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BAC

Clone NameMSMg01-362A20
Chromosome15 (Build37)
Map Location 48,594,014 - 48,594,241
singlet/doubletsinglet
Overlap genenone
Upstream geneCsmd3
Downstream geneEG665146, LOC100039600, LOC100039539, LOC665160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362A20.T7 (MSMg01no362_a20.b1)MSMg01-362A20.TJ (MSMg01no362_a20.g1)
ACCAG470830AG470831
length838766
length of high quality
(start - end)		237 (48 - 284)516 (79 - 594)
definitionCHROMAT_FILE: MSMg01no362_a20.b1 PHD_FILE: MSMg01no362_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:16 2005CHROMAT_FILE: MSMg01no362_a20.g1 PHD_FILE: MSMg01no362_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTTTTTTCCTACATCAGACTCTTGAATGCTGAGATTACAGGC
ATGTACTATCATCCCCAACTTTGGAATAACACTTTATTGCAAGTAGAATA
TGCTCCAAGGATTTTATCCCATGTGTGACATAAATTTTTTTATTGTAAAA
ATCCTGTTAACTCAAAAATATTCTTTCTTGCAAAATAGTAGTTACAGGTT
TTTTGTTTGTTTGGTTGGTTGGTTGGTTAGTTGNNTNCNNCNNNTNNTTT
TTTTTCTTTCTTTTTTTCTTTTTTTTTATTTTTTTTTTNTTTTCTTTTTT
TTTTTTTACTCTTTCTCCTTTTTTTTCCCCTCCTTATTCTTACCTCACAA
TATCATATATATTTCCATTTTCCCCCCTATTATTCTTTACCTTATATTTC
CTCCTTTTTCCCTCTTATAATCTCCTCAATCATATCACTTACTCTCCCTT
CTCCTTTTACTCTCTTCCTTATTTCCCTATTTTCACCCTTATTCCACTCC
TATTTTATTCCTTTTATCTTCTCTCCCCACCACCCTCTTTTTTTATTACC
TCCACACCCCTATTATTCACCCCTTTCTCTTCTAACCCCACTTTCTTTTA
TATTTTTATCTTTATTCTCCCCCTTCAATTATCCTACTCACCTTTCTATT
ATTTTTATCATTCACCTTCCCCTATTTTTCTTTTTATATCCCCCTTTTCC
TCTTTCCCCCCCTCCATCCCCCCTTACCTTCTCTACTTTTTTTTTCCCCC
TCTCTCCTTCTCAATTCCTTCCCTCCCTTCTCTCCTTN

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAATGGGACCTCATGAAACTG
CAAAGCTTCTGCAAGGAAAAGGCACCGTCAATAAGACAAAAAGGCCTCCA
AAGGATTGGGAAAAGATCGTTGCCTATCCAAAATCAGATAGGAGACTATT
TTCCAATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAAATCAAATA
ACCCCATTAAAAAATGGGGCTCACAGCTAAACAAAGAATTCTCACCTGAG
GAATACTGAATAGCTAAGAAGGACATGAAAAAATGCTCAGCATCCTTAAT
CATCAGAGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAG
TCAGAATGGCTAAGATCAAAAATTCAGGGGACAGCAGATGCTGGTGAGGA
TGTGGAGAAAGAGGAACACTCTTTAATTGTTGGTGGGATTGCAAGCTTGT
ACAACTACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAG
TACTACTGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGAT
GTCCCAACCGGTAAAAAGGACACATGCTCCACTATGTTCATAGCAGCCTT
TATTTATAAAAGCCAGAAGCTGGGAAAGATCCCTAATGCCCCTCCCCAGA
GGAAAGGATAACAAAAATGGGGGAACTTTTACCCAATGGAGTACAACTCC
GCCTATTAAAAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_a20.b1 MSMg01no362_a20.b1 CHROMAT_FILE:
MSMg01no362_a20.b1 PHD_FILE: MSMg01no362_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:16 2005
         (237 letters)



>mm_chr15_48593810_48594446
          Length = 637

 Score =  433 bits (224), Expect = e-126
 Identities = 227/228 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttttttcctacatcagactcttgaatgctgagattacaggcatgtactatca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttttttcctacatcagactcttgaatgctgagattacaggcatgtactatca 264

                                                                       
Query: 65  tccccaactttggaataacactttattgcaagtagaatatgctccaaggattttatccca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccccaactttggaataacactttattgcaagtagaatatgctccaaggattttatccca 324

                                                                       
Query: 125 tgtgtgacataaatttttttattgtaaaaatcctgttaactcaaaaatattctttcttgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtgtgacataaatttttttattgtaaaaatcctgttaactcaaaaatattctttcttgc 384

                                                           
Query: 185 aaaatagtagttacaggttttttgtttgtttggttggttggttggtta 232
           |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 385 aaaatagtagttacaggttttttgtttgtttgtttggttggttggtta 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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