Query= MSMg01no362_l11.b1 MSMg01no362_l11.b1 CHROMAT_FILE:
MSMg01no362_l11.b1 PHD_FILE: MSMg01no362_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:11 2005
(576 letters)
>mm_chr15_46895848_46896822
Length = 975
Score = 1093 bits (565), Expect = 0.0
Identities = 571/573 (99%), Gaps = 1/573 (0%)
Strand = Plus / Minus
Query: 4 ggaattcatgactgattagcagttttgtgggtggggagtaagtatggcagagcaagaatt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 ggaattcatgactgattagcagttttgtgggtggggagtaagtatggcagagcaagaatt 716
Query: 64 atgcactatatgaagaagaatgaagttataaagggtgtactgaatgagataatagcacta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 atgcactatatgaagaagaatgaagttataaagggtgtactgaatgagataatagcacta 656
Query: 124 agtttatgtgagtcagaaaattagtggaagtgaccttttgtaaggatttcctggaatcca 183
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 655 agtttatgtgagtcagaaaattagtggaagtgaccttttgtaaggatttcc-ggaatcca 597
Query: 184 cacattttgtttatgtaatatcaatattgatggatattttcagtgtgtgagataagagat 243
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 cacatcttgtttatgtaatatcaatattgatggatattttcagtgtgtgagataagagat 537
Query: 244 taggagtgagaaagtagtgaataatgtaagaggcattgcaacagaagtctcttggtgatc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 taggagtgagaaagtagtgaataatgtaagaggcattgcaacagaagtctcttggtgatc 477
Query: 304 tggtagaaataagatttgaaacagcaaccaaatttggaatatataacatttatacagttt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tggtagaaataagatttgaaacagcaaccaaatttggaatatataacatttatacagttt 417
Query: 364 tatggcataaccaataaatgtcatttcgtcaatgtatgtcacatcttgtaggatcacaat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tatggcataaccaataaatgtcatttcgtcaatgtatgtcacatcttgtaggatcacaat 357
Query: 424 ttataactcttattaaatttctctgtttactaaaatcaattttatgataaattatagatc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ttataactcttattaaatttctctgtttactaaaatcaattttatgataaattatagatc 297
Query: 484 tagtgagatttcactgagagatgtgtcactggcctatcatactctgcttcaactagcaag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tagtgagatttcactgagagatgtgtcactggcctatcatactctgcttcaactagcaag 237
Query: 544 attattattctaagaaaaaagaggtctacgcaa 576
|||||||||||||||||||||||||||||||||
Sbjct: 236 attattattctaagaaaaaagaggtctacgcaa 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 975
Length adjustment: 10
Effective length of query: 566
Effective length of database: 965
Effective search space: 546190
Effective search space used: 546190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no362_l11.g1 MSMg01no362_l11.g1 CHROMAT_FILE:
MSMg01no362_l11.g1 PHD_FILE: MSMg01no362_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:11 2005
(564 letters)
>mm_chr15_46667445_46668408
Length = 964
Score = 1060 bits (548), Expect = 0.0
Identities = 560/564 (99%)
Strand = Plus / Plus
Query: 1 ctatgtaattcatgtttacagaaacagctggcctatattttatgtcagtagaatcatgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatgtaattcatgtttacagaaacagctggcctatattttatgtcagtagaatcatgaa 260
Query: 61 atctttatgttgtttctgaaaaagaaaaagcaatattaaaaaaaattctctaattttttt 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctttatgttgtttctgcaaaagaaaaagcaatattaaaaaaaattctctaattttttt 320
Query: 121 aggctaggtgacagctgaactatttaacatatcaaaattttgagatataaaatataattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggctaggtgacagctgaactatttaacatatcaaaattttgagatataaaatataattg 380
Query: 181 ggaatttagattggactgttttctaagaattgatgatgatagccttgtatggctttatgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaatttagattggactgttttctaagaattgatgatgatagccttgtatggctttatgc 440
Query: 241 atactcaaacttaatatgcagttcttagccctcattgcatcaacattcacatgctgggaa 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 atactcaaacttaatatgcagttcttagccctcattgcatcaacgttcacatgctgggaa 500
Query: 301 gtcataagtcacaggcaagcccatgcaaattttctaagattatgacaaagctgtgaactg 360
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcataagtctcaggcaagcccatgcaaattttctaagattatgacaaagctgtgaactg 560
Query: 361 tgtctaattcatcattctaccatctgtttaacatggatttatcactagttactggcttgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtctaattcatcattctaccatctgtttaacatggatttatcactagttactggcttgt 620
Query: 421 agtaagcaatctttacaatctctattcatcctgaacactgatctgtaaagtctcatgcac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtaagcaatctttacaatctctattcatcctgaacactgatctgtaaagtctcatgcac 680
Query: 481 agagcctcggcaggacttccagatctcagccagcaccagacttaatacaaatgcaatgct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agagcctcggcaggacttccagatctcagccagcaccagacttaatacaaatgcaatgct 740
Query: 541 ggggaaaaagagatttatatcctg 564
||||||||||||||||||||||||
Sbjct: 741 ggggaaaaagagatttatatcctg 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
