BAC Information

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BAC

Clone NameMSMg01-363F10
Chromosome15 (Build37)
Map Location 99,987,275 - 99,987,849
singlet/doubletsinglet
Overlap geneDip2b
Upstream geneSpats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik
Downstream geneAtf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363F10.T7 (MSMg01no363_f10.b1)MSMg01-363F10.TJ (MSMg01no363_f10.g1)
ACCAG471802AG471803
length755752
length of high quality
(start - end)		580 (39 - 618)281 (90 - 370)
definitionCHROMAT_FILE: MSMg01no363_f10.b1 PHD_FILE: MSMg01no363_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:00 2005CHROMAT_FILE: MSMg01no363_f10.g1 PHD_FILE: MSMg01no363_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTC
TTTGAATTTCCATGTTCACTGTAGAAAAATCTACGGTATAGAAATGAGTA
TAGAACATTCCTTCAGATTGTTAGGTAAGTGTTCCTCTCTGTCCCTCACA
ATGGAGCTCAGCTGACTCTGATAAGCAGCCTTTATATTTGGGCATTCCCA
GCAGTAGGAGTAGGAGCCACCCTCCCCCGGAAGGTCTGATCTGTGAGAGC
CCTAGTTGTCCTGTCTCAATGTGAGAAGACATCAGAGACTGAGGAAAAAG
TTGTGCCAGAGGTTAGAGTTATGTTCGAGCCCCATGAACTTACTTTGTCT
TCTTGCTTGTTTGCCACAGTACCTCAGCCAGATCCCAACCAGCCAAAGCC
TGAAGGCCGCCAGATGACACCAGTGAAAGGAGAGCCCCTGGGCGTCATCT
GTAACTGGCCACCTGCACTGGAATCTGCTCTGCAGCGCTGGGGCTCTACC
CAAGCCAAGTGCCCCTGCCTGACTGGGCTGGATGTGACGGGGAAACCAGT
CTACACTCTCACATACGGTGGGTCTCAGTTCCCCACTGCGCTAAGATTTT
CTGAGTATCATGGGTCGTGTATTTCTTGGTATTTCTCAGTTGCAATGGCT
CAATTTATTAATTGAAGTGAGCCCTATTTCCGTGGACCTTTGGCTCCATT
CCAGGTTCCTACGAAGACAAGAAATTTTGAGGTTTGAGGTTGCTCCCTTC
TCTTA

NTTTTCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGACCACAAA
CAAAACAGATAAATTTAAGTAAGACATATATTTATGGGCTGGTGAGATGG
CTCACTGGTTAAGAGCACTGACTACTCTTCCAAAGGTCCTGAGTTCAAAT
CCCAGCAACCACATGGTGGCTCACAATATGACGCCCTCTTCCGGTGTGTG
TGAAGACAGCTACAGTGTACTTACATGTAATAATAAATAGATCTTTGGGA
AGGTGGGGGAGGGAGAACAGATTTTTTTTTGAGTGGGTGTTAAGATTTGG
AAATCTGTGTAGCTAATTACACCGCACCATGACACAGCTGAGGAGGATAT
AACATGGTACCAGAGCTGAGGAAGGGACCCTCAGTGTCTAGGGAGCACAG
AGGTGCAAATTGTTGAAGATCCTGACCTTGGCGGAGCGTGGAGGTGCACG
TCATTTGAACTCCGGATTTGTGGAAGAGCTTTTATGTTTTTTCTCCGTCG
GTCATTGAGTTTGGTGGTGACTTGTGATTCTTTCGTCGTCTTCTTCTTGG
CCTATTATTTTAATAATTATTATTATTATTTTTTCTGAAGCCTACCCGGT
TAATTTTTTTTACTCCTTCGCGTCTTTCTGTTTTTTTAGTCCTCTTATGC
ATTCGAATCAATTTTTTTTTTTTATATTTTATCATTTATTTGCCTCTCAC
CN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_f10.b1 MSMg01no363_f10.b1 CHROMAT_FILE:
MSMg01no363_f10.b1 PHD_FILE: MSMg01no363_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:00 2005
         (580 letters)



>mm_chr15_99987069_99988049
          Length = 981

 Score = 1054 bits (545), Expect = 0.0
 Identities = 568/577 (98%), Gaps = 5/577 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctttgaat--t-tccatgttcactgtagaaaaatctacggtatagaaatgagtat 63
           |||||||||||||  | |  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctttgaataatgt--atgttcactgtagaaaaatctacggtatagaaatgagtat 264

                                                                       
Query: 64  agaacattccttcagattgttaggtaagtgttcctctctgtccctcacaatggagctcag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaacattccttcagattgttaggtaagtgttcctctctgtccctcacaatggagctcag 324

                                                                       
Query: 124 ctgactctgataagcagcctttatatttgggcattcccagcagtaggagtaggagccacc 183
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 325 ctgactctgataagcagcctttatatttgggcactcccagcagtaggagtaggagccacc 384

                                                                       
Query: 184 ctcccccggaaggtctgatctgtgagagccctagttgtcctgtctcaatgtgagaagaca 243
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcccccggaagctctgatctgtgagagccctagttgtcctgtctcaatgtgagaagaca 444

                                                                       
Query: 244 tcagagactgaggaaaaagttgtgccagaggttagagttatgttcgagccccatgaactt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcagagactgaggaaaaagttgtgccagaggttagagttatgttcgagccccatgaactt 504

                                                                       
Query: 304 actttgtcttcttgcttgtttgccacagtacctcagccagatcccaaccagccaaagcct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 actttgtcttcttgcttgtttgccacagtacctcagccagatcccaaccagccaaagcct 564

                                                                       
Query: 364 gaaggccgccagatgacaccagtgaaaggagagcccctgggcgtcatctgtaactggcca 423
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaaggccgccagatgaccccagtgaaaggagagcccctgggcgtcatctgtaactggcca 624

                                                                       
Query: 424 cctgcactggaatctgctctgcagcgctggggctctacccaagccaagtgcccctgcctg 483
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cctgcactggaatctgccctgcagcgctggggctctacccaagccaagtgcccctgcctg 684

                                                                       
Query: 484 actgggctggatgtgacggggaaaccagtctacactctcacatacggtgggtctcagttc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 actgggctggatgtgacggggaaaccagtctacactctcacatacggtgggtctcagttc 744

                                                
Query: 544 cccactgcgctaagattttctgagtatcatgggtcgt 580
           |||||||||||||||||||||||||||||||||||||
Sbjct: 745 cccactgcgctaagattttctgagtatcatgggtcgt 781


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 981
Length adjustment: 10
Effective length of query: 570
Effective length of database: 971
Effective search space:   553470
Effective search space used:   553470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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