BAC Information

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BAC

Clone NameMSMg01-365N09
Chromosome15 (Build37)
Map Location 38,391,108 - 38,391,349
singlet/doubletsinglet
Overlap genenone
Upstream geneNcald, LOC100041313, LOC667534, Rrm2b, LOC100041478, Edd1, Odf1, LOC382986, LOC667563, Klf10
Downstream geneAzin1, Siah1-ps2, Atp6v1c1, Baalc, TOB3L, Fzd6, LOC636952, Cthrc1, Slc25a32, Wdsof1, LOC671215, Rims2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365N09.T7 (MSMg01no365_n09.b1)MSMg01-365N09.TJ (MSMg01no365_n09.g1)
ACCAG473695AG473696
length792757
length of high quality
(start - end)
243 (72 - 314)454 (57 - 510)
definitionCHROMAT_FILE: MSMg01no365_n09.b1 PHD_FILE: MSMg01no365_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:26 2005CHROMAT_FILE: MSMg01no365_n09.g1 PHD_FILE: MSMg01no365_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTGTTTCACCAGAGTCTTCAGGCAAAATCCGGTGTGGGATGTGGTGGGA
CTTGGTCCCCTGTGGGGTCCCGTGCCTATGTGAACACCACCACCACACAC
ACATCTTTGGAATCAGTAATCTGTTTCTATCTAAATGAAGCAAAAAACCA
AACCAAACAAACAAAACCCCTTAACTTTACAAAGTAAGTTGATACAATAG
GCAAGGCACAACGGCATGAGACCTGTAATTGCAGGACTCAGTCGGCAGAA
GGATCAGGAGTTCTTTTTTTAGCGTTGGGTTCAATCCCCAGCACCTCCTA
TAACAGGTATGCTCTGAACCTCTTGGGAGGTAACGGTAGAAGGGTCAGGA
ATCTAACCCCACCTTCAATATGTTCCAGGCTATCCTGGGCTACTTGGGAC
CATGTCTCAAAATTTCCATTTTATCCTTTCTTAACATACCTCACCCTTTT
ATTATAACTTCTCTTATATTGCTCCCAACCAGTTTATAATATTGTACTCT
CATCACCTCTTTCTTTCTTTTTATTGATTAACCCACTATACACATTTCCT
TGCACTCCTTACTACTTCCAATATTCGCTTATTTTAATTACTTTTTCCCT
TTTCCATTTTCTCCCTTCCTTCCCCCCCTCTCCCCATAATTCCCTTTCCT
CATTTCTCCCTTTAACTCCCTTACCTCTTCTTATTTTCCCCTTCTATCCA
TTTTTTCCCCCTCACTTTTTCTATCCCCTTCTCTTCTTTATT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAAGGCTGACTTTGTCTACATAGCAAATTCCAGGTCAGACAAGGG
CTATATGGTGAGACTCTGTATCAAAAGACAAAAGAAGAAGAAATGAAGTA
TCGAGCCACCTTTCCTGGGTAAGCGTAGCTACCACCCCTCACTAGAGAAG
CCTCTCCTCACAGCAATTGGAGATCACCACAGCTGCCCACAGCTGGATGC
AAAGCGGAGATCATGGGAGCCCAGCCCCAGTGGATTCATCTACATCAGAG
TTTTTGCATCTATGCATCAGGGAACATTGCAGAAGATGGGGTAGATGCAG
GCAGTAGGGGCACTGGAAGATTTTTTGTTTGTTTGTTTGGTTGGCTCCCC
GACACAGGGTTTCTCTGTGCAGCCCTGGCTGTCCTGGAACTCACTCTGTA
GACCAGGCTGGCCTCGAACTCAGAAATCCGCCCGCCTCTGCCTCCCAAAT
GTTAGGATTAAAGGTGTGTGCCACCACTGCCTGGCGCACTAGAAGAATTT
TAAAAGCCAGAAAATCAGACAGGCTGCTGCAAACAGACAGGCTAGAAATA
GCGGGTTAATGGGGACCAGAACAGGGGACCAGATCTATGGTGCTGGTTAA
CGGGGAAAGGAAAAAAATCTTGGGTCCCCAACCCTAAAACAAAAAATTCT
TATCGAACTTCAAGTTTTCCTAAGGAAGCGCCCCCAATAAGGGTCTAATG
GAAACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_n09.b1 MSMg01no365_n09.b1 CHROMAT_FILE:
MSMg01no365_n09.b1 PHD_FILE: MSMg01no365_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:26 2005
         (243 letters)



>mm_chr15_38390908_38391550
          Length = 643

 Score =  445 bits (230), Expect = e-129
 Identities = 239/242 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcaaaatccggtgtgggatgtggtgggacttggtcccctgtggggtcccgtgcctatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 442 ggcaaaatccggtgtgggatgtggtgggacttggtcccctgtggggtcctgtgcctatgt 383

                                                                       
Query: 61  gaacaccaccaccacacacacatctttggaatcagtaatctgtttctatctaaatgaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gaacaccaccaccacacacacatctttggaatcagtaatctgtttctatctaaatgaagc 323

                                                                       
Query: 121 aaaaaaccaaaccaaacaaacaaaaccccttaactttacaaagtaagttgatacaatagg 180
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 322 aaaaaaccaaaccaaacaaacaaaaccccttaactttaaaaagtaagttgatacaacagg 263

                                                                       
Query: 181 caaggcacaacggcatgagacctgtaattgcaggactcagtcggcagaaggatcaggagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 caaggcacaacggcatgagacctgtaattgcaggactcagtcggcagaaggatcaggagt 203

             
Query: 241 tc 242
           ||
Sbjct: 202 tc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)