Query= MSMg01no367_i13.b1 MSMg01no367_i13.b1 CHROMAT_FILE:
MSMg01no367_i13.b1 PHD_FILE: MSMg01no367_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:43 2005
(526 letters)
>mm_chr15_42442705_42443631
Length = 927
Score = 748 bits (387), Expect = 0.0
Identities = 402/407 (98%), Gaps = 2/407 (0%)
Strand = Plus / Minus
Query: 12 gaattctctctatgcatgcactctgcttaagtcctgtgcagtttctgggggagattaaca 71
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gaattctctctagggatgcactctgcttaagtcctgtgcagtttctgggggagattaaca 348
Query: 72 tggccctcatactcaatgta-tttttttgattgatcaaggaagggttttattaagccaat 130
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tggccctcatactcaatgtattttttttgattgatcaaggaagggttttattaagccaat 288
Query: 131 cagtaaagaatcactttcttggcactgtagtgtgatggattttgtatttacattaacaaa 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 cagtaaagaatcactttcttggcactgtagtgtgatggattttgtatttacattaacaaa 228
Query: 191 agactactaattaca-tgtttttttattagatattttctttatttacatttcaaatgcta 249
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 agactactaattacattttttttttattagatattttctttatttacatttcaaatgcta 168
Query: 250 tcccgaaaggaaagtttcctatacactccccccaccctgctcccctttccacccactccc 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 tcccgaaaggaaagtttcctatacactccccccaccctgctcccctttccacccactccc 108
Query: 310 acttcttgaccctggagttcccttgtactggggcatataaagtttgcaagacctagggac 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 acttcttgaccctggagttcccttgtactggggcatataaagtttgcaagacctagggac 48
Query: 370 ctctcttcccaatgatgaccgactaggccatcttctgctatatatgc 416
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 ctctcttcccaatgatgaccgactaggccatcttctgctatatatgc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 927
Length adjustment: 10
Effective length of query: 516
Effective length of database: 917
Effective search space: 473172
Effective search space used: 473172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_i13.g1 MSMg01no367_i13.g1 CHROMAT_FILE:
MSMg01no367_i13.g1 PHD_FILE: MSMg01no367_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:44 2005
(538 letters)
>mm_chr15_42305463_42306398
Length = 936
Score = 984 bits (509), Expect = 0.0
Identities = 531/539 (98%), Gaps = 4/539 (0%)
Strand = Plus / Plus
Query: 1 tattaggcgtggcagacttctgctacatatgtgacacacaggagggcgggacaacatttc 60
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tattaggcgtgtcagacttctgctacatatgtgacacacaggagggcaggacaacatttc 260
Query: 61 tgatgtaaataaataaaagaagtgtgtaaaaatcatgatggaaaaaaaggagttctctta 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 tgatgtaaataaataaaagaagtgtgtaaaaatcatgatggaaaaaaaagagttctctta 320
Query: 121 gggaaaagaaaaaaaatatatattcctttaaactcctaatgagaacacttttagtttaca 180
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggaaaag--aaaaaatatatattcctttaaactcctaatgagaacacttttagtttaca 378
Query: 181 caacgaaaa-gtctggaaaaccctattgtaatgaggtggctggctcttacattgaattcc 239
|||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 379 caac-aaaatgtctggaaaaccctattataatgaggtggctggctcttacattgaattcc 437
Query: 240 tcaagagagagtgtgtgtagacttattttaggatatccaaatgcccctccctaccatcag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tcaagagagagtgtgtgtagacttattttaggatatccaaatgcccctccctaccatcag 497
Query: 300 tttttctcatttcttgtatattcatatttttgtatgattctttgttttattttattttta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tttttctcatttcttgtatattcatatttttgtatgattctttgttttattttattttta 557
Query: 360 agtcacacattacttggttcaaagaatgttgcccagaatgcatataaaaaaatgtcaggt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agtcacacattacttggttcaaagaatgttgcccagaatgcatataaaaaaatgtcaggt 617
Query: 420 gaaatcaaagagcatttgtgagtctttcccacatcttgtgccttctaccccatctttctc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gaaatcaaagagcatttgtgagtctttcccacatcttgtgccttctaccccatctttctc 677
Query: 480 actcccacctatagagcaaatccgaaggcttctttcaagaagaaaattatctcaagaaa 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 actcccacctatagagcaaatccgaaggcttctttcaagaagaaaattatctcaagaaa 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 936
Length adjustment: 10
Effective length of query: 528
Effective length of database: 926
Effective search space: 488928
Effective search space used: 488928
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
