BAC Information

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BAC

Clone NameMSMg01-369M02
Chromosome15 (Build37)
Map Location 92,517,174 - 92,517,653
singlet/doubletsinglet
Overlap genePdzrn4
Upstream geneLrrk2, Muc19, Smgc, LOC100042529, Cntn1
Downstream geneLOC100042552, LOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623, Prickle1, Zfp42-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369M02.T7 (MSMg01no369_m02.b1)MSMg01-369M02.TJ (MSMg01no369_m02.g1)
ACCAG476664AG476665
length750749
length of high quality
(start - end)
483 (67 - 549)461 (79 - 539)
definitionCHROMAT_FILE: MSMg01no369_m02.b1 PHD_FILE: MSMg01no369_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:34 2005CHROMAT_FILE: MSMg01no369_m02.g1 PHD_FILE: MSMg01no369_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GTACTCTCCACTGTTAGCTCACTAGGGTGTAGCTCACCAGCCCATCAGCC
TCTTTCTTTCCACCTGTCTATTACCTTTTACAGACATGCAAGAAATATTC
AAAATAATTGCTGCAAATTTTAAACCACTGACTCCATAGAAATTAAAAAA
AAAAAAAGAACCAAAACAATATTTTAGGAAAGTACCCTTAGTAAGAGTCA
GGCTATGGAAATGGTTTTGATCTGAACCCTGATATAGATGAAGTATGAAA
ACGTTTTTATGACTTGAATATGAAAACCAGTATATTAGTGTATCCATGTG
GAGTTGGTTCATATTCGTTTCTACTAATGTTCTTCCGTGCCTGCCATTTT
CTTAATTATGTTCCCTGAAATCTTGAAGGCCTGTAACTTGTCATATATTG
GAACTTGTACTTCCAGGCTCGGTGACACATCTTCCCTTCCTACAACTGCA
GTTCCTTGGCCTGAGATATCATTCTGTCTCTAGGTCAGGCTTTGGTCTCA
GATAGCGAGTTCTTTGTCCCTGTGGTCATCAGCCAAGTTGTCATACCAAA
TGTAATTATTGTGGACCTCAGCTGTAATTGTTGTTATTCCCCATTCTGGC
CAAACTTTTTTTTCTTGTTTTCTACCTTGCTCTGTATTTCATAGTCCCAT
TTACTCCGCGTCCCTATCCCGGCTCCTCTAATTTATTTTTATCCCCTCCC

CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAACAAAATGGAAACAAACAAACA
AAAGATAATACAGGAAAAAAAATCAATGAAACAAGTTGGTTCTTTGAATA
AATCCATAAGATTGATAAATCATTAGCTAAATTAACTTAAAAATAAAGAG
AGAAGATCCGAATAAAACTACAGGTAAAAATGGGGGCATCACAACAGACA
GTAAGGAAATCCAAAGAACCAGAGGGACATTCTCTAAAAGTCTATACTCC
AGCAAACTTGCAAATTAGTGGATGGATTTCTTGATATATAGAGCTTACAA
AATTAAATCAAGATTATGTAGGCAATTTAAACAAAGCAATAACCCTTAAT
GGAATACAACTAGTTATTGAATGTTCCTCAACCACAAAAAGCTCCTGTCC
AGATGGATTCAGTGCAAAATTCCACCAGACCTTCAAAGAAGAATTAATAC
AAGTAGTCTTCAAATTGTTCCATAATGTAGAAACTGAAGAAACATTTCCT
AATCATTTTATAAGGCCACAGGTACCCTGATACCTAAACCACACAAAAGC
CCAACAGTGAAAGAGAATTACAGACCACCCCCTCTTATGAACATAAATGC
CAAAATTCTTAACAAACCACTTGGTATTGGTATCCTTAGATTACTTCCTA
CTTTTATCCGTCATGATTATATTAGCTTCCTTTCCCCAGATGCCCGGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_m02.b1 MSMg01no369_m02.b1 CHROMAT_FILE:
MSMg01no369_m02.b1 PHD_FILE: MSMg01no369_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:34 2005
         (483 letters)



>mm_chr15_92516974_92517853
          Length = 880

 Score =  781 bits (404), Expect = 0.0
 Identities = 462/486 (95%), Gaps = 9/486 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctcactagggtgtagctcaccagcccatcagcctctttctttccacctgtctattacct 60
           |||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||
Sbjct: 201 gctcactagggtgtagctcaccagcctaccagcctctttctttacacctgtctattacct 260

                                                                       
Query: 61  tttacagacatgcaagaaatattcaaaataattgctgcaaattttaaaccactgactcca 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttatagacatgcaagaaatattcaaaataattgctgcaaattttaaaccactgactcca 320

                                                                       
Query: 121 tagaaa---ttaaaaaaaaaaaaagaaccaaaacaatattttaggaaagtacccttagta 177
           ||||||   ||      |||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 321 tagaaattttt------aaaaaaagaaccaaaacaatcttttagggaagtacccttagta 374

                                                                       
Query: 178 agagtcaggctatggaaatggttttgatctgaaccctgatatagatgaagtatgaaaacg 237
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agagtaaggctatggaaatggttttgatctgaaccctgatatagatgaagtatgaaaacg 434

                                                                       
Query: 238 tttttatgacttgaatatgaaaaccagtatattagtgtatccatgtggagttggttcata 297
           ||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 435 tttttatgacttgaacatgaaaagcagtatattagtgtatccatgtggagttggctcata 494

                                                                       
Query: 298 ttcgtttctactaatgttcttccgtgcctgccattttcttaattatgttccctgaaatct 357
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttcgtttctactaatgttcttctgtgcctgccattttcttaattatgttccctgaaatct 554

                                                                       
Query: 358 tgaaggcctgtaacttgtcatatattggaacttgtacttccaggctcggtgacacatctt 417
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tgaaggcctgtgacttgtcatatattggaacttgtacttccaggctcggtgacacatctt 614

                                                                       
Query: 418 cccttcctacaactgcagttccttggcctgagatatcattctgtctctaggtcaggcttt 477
           ||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 615 cccttccgacaactgcagttccttggcctgagatatcatcctgtctctaggccaggcttt 674

                 
Query: 478 ggtctc 483
           ||||||
Sbjct: 675 ggtctc 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 880
Length adjustment: 10
Effective length of query: 473
Effective length of database: 870
Effective search space:   411510
Effective search space used:   411510
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)