BAC Information

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BAC

Clone NameMSMg01-371C02
Chromosome15 (Build37)
Map Location 99,153,645 - 99,154,100
singlet/doubletsinglet
Overlap geneFmnl3
Upstream geneOlfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b
Downstream geneTegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371C02.T7 (MSMg01no371_c02.b1)MSMg01-371C02.TJ (MSMg01no371_c02.g1)
ACCAG477713AG477714
length755761
length of high quality
(start - end)
456 (72 - 527)517 (42 - 558)
definitionCHROMAT_FILE: MSMg01no371_c02.b1 PHD_FILE: MSMg01no371_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:25 2005CHROMAT_FILE: MSMg01no371_c02.g1 PHD_FILE: MSMg01no371_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGACTCCCAGGGGAACTGACTATAGAGCC
TTCAGCCCATTCTTCCCTCAATGTTGCTGTCTGCCTGATAGGAGACATAT
GAGAACACAAGCAACCAGGTGCATACTCTTCGGAGGCTCATTAAGGAAAA
GGAGGAGGCCTTCCAGCGCCGATGCCACCTGGAGCCAAGTGCCCGGGGCC
TGGAATCCATGGGCGGCGAGGCCCTAGCCAGGGTAGGCCCTACAGAGTTG
ACTGAAGGCATCCCACCCTCTGACTTGGACCTGCTGGCTCCAGCCCCACC
TACTGAGGAGACTCTTCCTCTGCCTCCTCCACCAGCTCCCCCTTTGCCTC
CGCCCCCTCCTCCACTACCAGGTAACTGGGACTTCCAAGCCGGGAGGGGC
AGGTTTTTTGTGAGGCCAGTACTGTAGTCAGAAATGTCTTTCTTAGGAAA
CAGCTGGGAAATAGCATCATTTGAGGGCCAGGAGGATATCATGTCAGGAT
GAGAGAGAGGGCTAAGGGAGGACCGGTATTTGTGGGACATAGGATTGCTG
GTAGCAGATTTCTGCTTTCAGGATCTCTGAGGTGGTGTTCTCAATTATTC
CTCTGTAGGCCGCCAAGTTGAAAGTCAACTTGAAATAAAATACTCCCGTC
GGAACTACGGCTGGTTCTCCCCTTCAGAATTATTCTAAGTTTCATTTTGA
CCCGN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTATATATTCTGTCGCGCCACTGTGAAATAGCTAAACTATATTACTATT
ATTTTTTTATCATTAGTGTCTTAACAACTGAATTTTTTTTTTTTTTAATG
AGACAGGATCCTCCCATAGCCCTGGCTCGCTTTGTAGATCAGGCTAGCCT
TGAGCTAACAGTTTTCCTCCTGTTTTATGCGTATGGATATTTTGTCTATA
TGCAGTCTGTACACGCTGTGCATGTCTGGTGTCCTTGGAGGCCAGAAGAG
GCCATTAGAAGTCCTGGCCCTGGAGTTCTAGAAGGTTGTGAGCTGCCTTA
TGAGTGCTGGGAACTGAGCCTGGGCCCTCTTCAAGAGCAGCCAGTGCTCT
TTAACTTCTGAGGCTCAGAATTACAGTCCTACCTGACTTTAACAATTAAT
AATTTGTGGTCCTAAATTATACTTCTTCAGTTGAGCATCCTTTAACAAAA
AAATGTGTGTGTGCGCGTGTGTACGCGTGTGCGCGTGGGTACATGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCATACCCTTGGAAAACATAA
GAGGGCCTCATATCCCGTATAACTGGAGTTACCCCCAGTTTATGGTTCGC
CCTGTGGCCCGTTGGTAATTGCACCCAGGCTCTTTTGTAATACCCTTCTA
TATTCTTTCTCATCTCAAACTCTTCTTTTCTCATCCGCATGTTATTATCT
CTATCTTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_c02.b1 MSMg01no371_c02.b1 CHROMAT_FILE:
MSMg01no371_c02.b1 PHD_FILE: MSMg01no371_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:25 2005
         (456 letters)



>mm_chr15_99153611_99154466
          Length = 856

 Score =  882 bits (456), Expect = 0.0
 Identities = 456/456 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgactcccaggggaactgactatagagccttcagcccattcttccctcaatgttgctgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tgactcccaggggaactgactatagagccttcagcccattcttccctcaatgttgctgtc 431

                                                                       
Query: 61  tgcctgataggagacatatgagaacacaagcaaccaggtgcatactcttcggaggctcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tgcctgataggagacatatgagaacacaagcaaccaggtgcatactcttcggaggctcat 371

                                                                       
Query: 121 taaggaaaaggaggaggccttccagcgccgatgccacctggagccaagtgcccggggcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 taaggaaaaggaggaggccttccagcgccgatgccacctggagccaagtgcccggggcct 311

                                                                       
Query: 181 ggaatccatgggcggcgaggccctagccagggtaggccctacagagttgactgaaggcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ggaatccatgggcggcgaggccctagccagggtaggccctacagagttgactgaaggcat 251

                                                                       
Query: 241 cccaccctctgacttggacctgctggctccagccccacctactgaggagactcttcctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 cccaccctctgacttggacctgctggctccagccccacctactgaggagactcttcctct 191

                                                                       
Query: 301 gcctcctccaccagctccccctttgcctccgccccctcctccactaccaggtaactggga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gcctcctccaccagctccccctttgcctccgccccctcctccactaccaggtaactggga 131

                                                                       
Query: 361 cttccaagccgggaggggcaggttttttgtgaggccagtactgtagtcagaaatgtcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 cttccaagccgggaggggcaggttttttgtgaggccagtactgtagtcagaaatgtcttt 71

                                               
Query: 421 cttaggaaacagctgggaaatagcatcatttgaggg 456
           ||||||||||||||||||||||||||||||||||||
Sbjct: 70  cttaggaaacagctgggaaatagcatcatttgaggg 35


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)