BAC Information

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BAC

Clone NameMSMg01-371L01
Chromosome15 (Build37)
Map Location 67,769,700 - 67,769,874
singlet/doubletsinglet
Overlap genenone
Upstream geneNdrg1, LOC100040667, St3gal1
Downstream geneZfat1, LOC100041000, EG665945, EG633752, Khdrbs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371L01.T7 (MSMg01no371_l01.b1)MSMg01-371L01.TJ (MSMg01no371_l01.g1)
ACCAG478134AG478135
length821821
length of high quality
(start - end)
247 (75 - 321)176 (79 - 254)
definitionCHROMAT_FILE: MSMg01no371_l01.b1 PHD_FILE: MSMg01no371_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:14 2005CHROMAT_FILE: MSMg01no371_l01.g1 PHD_FILE: MSMg01no371_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGAGAGCAGTGGTTCCTTTTGCTGT
TTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTCTGCTCATCTC
CCCTTCCTCCGGCTCTCAGGCTCTTTCATTCCCTCTTCTGGAAAGTTCAC
TGAGCCTTGGACACAGCAGCATATGCTGAAGTCTCAGAGACAGAAACAAA
TGGCATTTTATGCAGCATGTTCCTCCGAAGAGCCATCGAGGTTGCTATGT
GCTTTGGTGGTTTCTTGCCTTCCACTTTTGGATACATGGCATACCATATA
TGGACAAGGTCTATCTTAACCCTTCAAATGACAAAGGGCTTGTGGTTTGT
TCCCAGTTTGTTAAATCTTATTTAAACCTCTTAGGATTTTCTTGTGCCTC
GTGTCCCTTTTTTTTCCTTTTTTTTAATACTTCTCCCCCTTCTTCTCCAG
ATATCCCTCACTTCTATCTTTTATTTTTTCACCCATTCCTTCCTCCTTAA
TCCCCATTTTATTATTCACTAATCCTTACCCATTCAATCTAATTCTTATT
CTCACTTTTTTTATATCTTTACTTTCCTTTATTTTCCCATTCATTTCCAT
TTCATTATCTTTTTTTTTCTTTTTTCCTCCCATCAACTTTCATTCCCACT
CCCTCCTTTCAATATACAATATTTCTTTTCCTCCTTCCCCAATTCCATTC
CACTCACTCCTTCTTTTTCACATACTTTTCCCTTATCACCTCCCATCACA
TTCTCTTAATCTCTCCCAACN
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAAGGTCTCATTGGATTACTAAAGTGAAATGTAGCTTGCTTGCT
CCTCGTTCATTTATAGTAAGGGAAATGGGGAAAGATTGAATTGTTCACAG
AGATTCTGAGTCTCAGGCCTTGGTTCTCTTCCACTTTTGTTTTTGTAAAA
GAATTTCATTTATTTTATGTGTGTGCATGTGTGTGTCAGAGGTCAACTCT
GTGCCTTTGCGGCTTTGCTTCTATGCTTTAGATCCTGAGCATTGGACTGA
GGTCATCACGGTCGGTAACGATGCTATTATCCTCTGTACCACCTTCGGCT
TTTAAGAGACTTTACGCAATGACTTTCCACGACAGTACATAAAAAGATGT
GTGAGATACTTGTATTATTCTGGCTTCAAATTTTCCTTATTATTGTTCTG
CATGTTTTTACTTTTGTCCAATTTTCTATATATCTGCTTTTCCCTTAATT
TACTATTCCTTCCTTTGTAAATGTCCTCCCTTTAACCGTTTTAATACATT
TTCATCTTTCTCCTCATTTTCTCCATTTTTATTTTGATCATATCCTCTTT
TGCTCTTTCTCTTTTGCTTCTCTTTACCTTTCATTAATTAATTTACTTTC
CGTTATCCTTTCCTCTTATTTTCTAATACTTTTTTTTTATCTCTTCATTT
TTACTCTTTCTTTATTTACACTATTCATCTTCTCTCTCTTTTATATTCTT
CTTTTTCTTTTCTTCATCTATTGTCACTCTATTCCCTTTTTTTCTCCCCG
CCTTCCTTCTCTTATTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_l01.g1 MSMg01no371_l01.g1 CHROMAT_FILE:
MSMg01no371_l01.g1 PHD_FILE: MSMg01no371_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:14 2005
         (176 letters)



>mm_chr15_67769500_67770075
          Length = 576

 Score =  339 bits (175), Expect = 8e-98
 Identities = 175/175 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgaaatgtagcttgcttgctcctcgttcatttatagtaagggaaatggggaaagattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agtgaaatgtagcttgcttgctcctcgttcatttatagtaagggaaatggggaaagattg 316

                                                                       
Query: 61  aattgttcacagagattctgagtctcaggccttggttctcttccacttttgtttttgtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aattgttcacagagattctgagtctcaggccttggttctcttccacttttgtttttgtaa 256

                                                                  
Query: 121 aagaatttcatttattttatgtgtgtgcatgtgtgtgtcagaggtcaactctgtg 175
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aagaatttcatttattttatgtgtgtgcatgtgtgtgtcagaggtcaactctgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 576
Length adjustment: 8
Effective length of query: 168
Effective length of database: 568
Effective search space:    95424
Effective search space used:    95424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)