BAC Information

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BAC

Clone NameMSMg01-372A22
Chromosome15 (Build37)
Map Location 86,156,896 - 86,157,337
singlet/doubletsinglet
Overlap geneTbc1d22a
Upstream geneAtxn10, EG223745, Wnt7b, LOC100042240, Ppara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu, Celsr1, BC021523, Cerk, LOC100042300
Downstream geneLOC100042309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372A22.T7 (MSMg01no372_a22.b1)MSMg01-372A22.TJ (MSMg01no372_a22.g1)
ACCAG478412AG478413
length860778
length of high quality
(start - end)		37 (62 - 98)488 (66 - 553)
definitionCHROMAT_FILE: MSMg01no372_a22.b1 PHD_FILE: MSMg01no372_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:43 2005CHROMAT_FILE: MSMg01no372_a22.g1 PHD_FILE: MSMg01no372_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCCCTAAACGACTCCTATATTCAGACCACCGCGGAATTCTTACACACA
CTCCAAGATGGAAACATGTCCAAGAATACAACAATGTATAAACTCTGTGT
GTGTGTGAGTCTCGTGTGTATCTGTGTGTATGTGTGTCTGTCTCTGTGTC
CACCCACACCACCACAAACCCAAACACAACACCCCAACAACAACCCACCC
CACCCCCCCCAACCCCCCCCCTCCCAATACAACCCAACCCACCCCCCTCC
CAAGTCACCCACAACCACCCCCACCCCACCACCACCCACCAAACCCCAAA
CCAACACACCCCTCTCTAACCCCCACACACACCACCCTACCCAACACACA
ATCACCAAACCCCCCCCCCTCCACACACCACCCCCCACCACCAACCAACA
CCAACAAACCCCCACACCACAAACCATCTCACCCCTCTCCCCACACCCCC
CATACCCCACAACAAACCATACCCCCACAACCCCCCTCCACACCCCAATA
CCCCCAACCAAAAACACTTCCCCACCCCCCCTCACCTCCTACACACTCCC
CTACCCCCCCCCCACTCTACACCATACCCCACCACAAATACTTCCCACCC
ACCCAAACCCCCCAACCCCCCCCCCCAAACCCCAAAACCCCACCACATCA
CCCCCCCACCACACCCAACACCACAAAAACCAAAATCAACAACCACCTCA
ACACACCACCCTTTTACAACACCCCACACACCCACCCCCAACCCCCCCAC
AAAAAACAACCCCACCCCCACTACCACACCACTCATCAAACACACCCCAT
ACCCTCAACCAAATCCAACACCCACCAACCAACAATTCCCCCCCCCCCCC
CCACCCCACA

GTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCATAACAATCCATCAGTGCGCTGGCAGACATGTCT
TCTCAGGTTGTCAGTTGAAACACAAAGTGACAAATCAGAACACAGTGAAA
GGACCTCATAACTCAGGGGAATGCCTGTGACCCAACACAAACAAGGCCAC
ACCTCAGGAGGAGCTGCTGGCAGCTCCTGGGTAGTCACTACTGACTCCAA
ATCAGACAGGCCAAGAACCTCTGGAAGCACAAGGGCAAGGGCAAGTCCAG
AGCCAGACATCTTCCTAAGAAGCCTTCACAGGCTTCCTTCCCAGAAACAT
CCAGCAGAGGCTGCCACAAGGCAACCAAGATGGCGGCTACATTGCTACAA
AGCTGCCCGAACTGACCACTCTTCCACTTCCTACTAACTCAGAACCAGAA
CATTCCTGCTGGGCACAGTCACTCATGTACCATGCCCAAGAGACTACCAG
TCACGTGGTGACTCTGACACATTGTTGCCACACATCCACCAGATAACTGC
AGTCACCAGGTTCCAACCCACTGCTGTTCTGTGGCACCTATGTGCCTGCC
CCACCCCAGTGTGTGTGTGTGTGTGACCGTGTGTGCCACAGGAATGTGAG
CATGGGAAAGAAAAACAACTAACTGCTGCTGCTGCTGCTGCCGCTGTCCG
TGTGTCCGGCAGATTCTGAGATCCTGTTACTCTGTATTCCCCTTTGTTCT
CTTTTTCCCAATATTAAATTACCATAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_a22.g1 MSMg01no372_a22.g1 CHROMAT_FILE:
MSMg01no372_a22.g1 PHD_FILE: MSMg01no372_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:43 2005
         (488 letters)



>mm_chr15_86156696_86157585
          Length = 890

 Score =  797 bits (412), Expect = 0.0
 Identities = 434/442 (98%), Gaps = 2/442 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataacaatccatcagtgcgctggcagaca--tgtcttctcaggttgtcagttgaaacac 58
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 642 cataacaatccatcagtgcgctggcagacatctgtcttctcaggttgtcagttgaaacac 583

                                                                       
Query: 59  aaagtgacaaatcagaacacagtgaaaggacctcataactcaggggaatgcctgtgaccc 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aaagtgacaaatcagaacacagtgaaaggacctcataactcaggggaatgcctgtgaccc 523

                                                                       
Query: 119 aacacaaacaaggccacacctcaggaggagctgctggcagctcctgggtagtcactactg 178
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 522 aacacaaacaaggccacacctcaggaggagctgctggcaactcctgggtagtcactactg 463

                                                                       
Query: 179 actccaaatcagacaggccaagaacctctggaagcacaagggcaagggcaagtccagagc 238
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 462 actccaaatcagacaggccaggaacctctggaagcacaagggcaagggcaagtccagagc 403

                                                                       
Query: 239 cagacatcttcctaagaagccttcacaggcttccttcccagaaacatccagcagaggctg 298
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 402 cagacatcttcctaagaagccttcacaggcttccttcccagaaacatccatcagaggctg 343

                                                                       
Query: 299 ccacaaggcaaccaagatggcggctacattgctacaaagctgcccgaactgaccactctt 358
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 342 ccacaaggcaaccaagatggcggctacattgctacaaagctgcccgcactgaccaatctt 283

                                                                       
Query: 359 ccacttcctactaactcagaaccagaacattcctgctgggcacagtcactcatgtaccat 418
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ccacttcctactaacccagaaccagaacattcctgctgggcacagtcactcatgtaccat 223

                                 
Query: 419 gcccaagagactaccagtcacg 440
           ||||||||||||||||||||||
Sbjct: 222 gcccaagagactaccagtcacg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 890
Length adjustment: 10
Effective length of query: 478
Effective length of database: 880
Effective search space:   420640
Effective search space used:   420640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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