BAC Information

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BAC

Clone NameMSMg01-372C05
Chromosome15 (Build37)
Map Location 68,906,774 - 68,907,162
singlet/doubletsinglet
Overlap geneKhdrbs3
Upstream geneZfat1, LOC100041000, EG665945, EG633752
Downstream geneLOC383050
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372C05.T7 (MSMg01no372_c05.b1)MSMg01-372C05.TJ (MSMg01no372_c05.g1)
ACCAG478472AG478473
length725736
length of high quality
(start - end)
389 (66 - 454)500 (71 - 570)
definitionCHROMAT_FILE: MSMg01no372_c05.b1 PHD_FILE: MSMg01no372_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:49 2005CHROMAT_FILE: MSMg01no372_c05.g1 PHD_FILE: MSMg01no372_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCACTTGGCATATGGCAAGCTTCTTAGGGATAGGTTTGGTAAAACTTC
ACCTTGTTCTGTACTGACAGTCATTAACATTGATTGCAGAGTATAATGGC
ATCTATTAAATGGAGATAACTCATGGGCTTGGATTTTAAGAGAAGATATT
ATTTCATGTCAACCCCCTCTGCTATCTGTAAAATCATTACATCAAAACTG
CAGGCTACTTTGTGGTTTTTCTAACAGAGCAGATAGAAGGATTGACAGTA
AAAACACATTCTTATTTTGACCAGTGAGCCAGCGGAACACTGTCAACTCG
ATATAAGACATTGATAAAGATCTCAGTGCCAAGAGTGCACCCACCACCCA
CTGCACATTGATGTAGATAACTAACACAACTGGAAATACAAACAAATAGA
CTTGGCACACATTCAACCTTGATCTCCTTTATGCCACAGAGGGCACATGC
AGGCCCTCCCTTAGCTCCTCTGATGTTGCCTCAAAACTGATTTCCCGGTT
TTGGAACTTGAGCATATACTCTGTTCATCTTGCGAAGCTCAATCTTAACC
CATCAAGCTCCTGCTCCTCCTGATGGAGTCTTGAACCCTGTTCTATGCCC
TCCTCCTCCGACGTCCTCGTGCCATATTTCCCCATCTTCGCGTTTTTTTG
TTGCTCCCCCTTTTTATTATCTGCC
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAG
CACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGT
CTGGCGGTTCCTCAGATTTTTGGACATAGTACTACTGGAGGATCCAGCAA
TACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGAC
ACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTG
GAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGT
ACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATG
AAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGATGG
CGCAACATCCTGAATGCGTTAACATTCACAAAGGAACCCCCCAATATGTA
CTTCCTGATAAGCGGAAATTATCCCCCAATCTAGGATTCCCAAATTTAGC
GCACCATTTGCCAAATACTTATATTCCCCACAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_c05.b1 MSMg01no372_c05.b1 CHROMAT_FILE:
MSMg01no372_c05.b1 PHD_FILE: MSMg01no372_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:49 2005
         (389 letters)



>mm_chr15_68906574_68907362
          Length = 789

 Score =  683 bits (353), Expect = 0.0
 Identities = 380/389 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcaagcttcttagggataggtttggtaaaacttcaccttgttctgtactgacagtcatt 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcaagcttcttagggataggcttggtaaaacttcaccttgttctgtactgacagtcatt 260

                                                                       
Query: 61  aacattgattgcagagtataatggcatctattaaatggagataactcatgggcttggatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacattgattgcagagtataatggcatctattaaatggagataactcatgggcttggatt 320

                                                                       
Query: 121 ttaagagaagatattatttcatgtcaaccccctctgctatctgtaaaatcattacatcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaagagaagatattatttcatgtcaaccccctctgctatctgtaaaatcattacatcaa 380

                                                                       
Query: 181 aactgcaggctactttgtggtttttctaacagagcagatagaaggattgacagtaaaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactgcaggctactttgtggtttttctaacagagcagatagaaggattgacagtaaaaac 440

                                                                       
Query: 241 acattcttattttgaccagtgagccagcggaacactgtcaactcgatataagacattgat 300
           ||||||  |  ||||||||||||||||||||| ||||| ||| || ||||||||||||||
Sbjct: 441 acattcagagattgaccagtgagccagcggaaaactgtgaacacgctataagacattgat 500

                                                                       
Query: 301 aaagatctcagtgccaagagtgcacccaccacccactgcacattgatgtagataactaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagatctcagtgccaagagtgcacccaccacccactgcacattgatgtagataactaac 560

                                        
Query: 361 acaactggaaatacaaacaaatagacttg 389
           |||||||||||||||||||||||||||||
Sbjct: 561 acaactggaaatacaaacaaatagacttg 589


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)