BAC Information

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BAC

Clone NameMSMg01-373G04
Chromosome15 (Build37)
Map Location 92,471,017 - 92,471,610
singlet/doubletsinglet
Overlap genePdzrn4
Upstream geneLrrk2, Muc19, Smgc, LOC100042529, Cntn1
Downstream geneLOC100042552, LOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623, Prickle1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373G04.T7 (MSMg01no373_g04.b1)MSMg01-373G04.TJ (MSMg01no373_g04.g1)
ACCAG479428AG479429
length724863
length of high quality
(start - end)
600 (18 - 617)247 (151 - 397)
definitionCHROMAT_FILE: MSMg01no373_g04.b1 PHD_FILE: MSMg01no373_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:20 2005CHROMAT_FILE: MSMg01no373_g04.g1 PHD_FILE: MSMg01no373_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCCTATTTCGAGAGGATCCGCGGAATTCTGTCCTTTTCCACTTCTTCT
CACCCTTCCCCCAACCTCCCATGAAGATATATTGTCTAGGACACATGCAG
GAGATCTGTTCGCAGCTATCTTTTACATAGAACTGATTGTTTAATTGCAG
ATTAAAGATTAATGCAAGTATAATGATTCCACGAGGACACTTCACACAAA
AGCATCCTGCATCGGGCTGCCTGCCTCCATTTTTCAATTTGACCATAAAT
TTGGCTGGGAATTAAATAGTAAGTAGCCGTGATTGCAACTCTGGTCTCTG
AAGGCACTCACGGGAATGAAAATAAATGAACAGGCTCTCACACAAAGCAT
GTTTCATTATGGTCATTAGTGGGCAGATTCTCAGCAGTATTGAAGGTGAA
ATTGTCTCGGAGAGTTGTTGGCACATCTGTTAGGAAGAGCCAGAAGCAGG
CTACAAAGGACGGAAGTGGTGTCGGTTGGAAAACGCATGCAATGTACTTT
TGAAACTTTAGCTCCTTTGTGTCTTTCCATTCTTTTAAAGGCATCAAGCG
TTAGCAGTAGGCTAATGATACAGAAGCGTGCATATTTGCTTGAGTATGTA
TTTTAAATTGGCACAATGTAGAATATGCTTATGAGGGTACTTTGATCAAA
ATTAGACCCACTTGGCCTAAAACTACCAATAAAACTTGCCAGGGTAAATA
GAACACTATCCTCCCACCCCCTTN
GGTTAGAAGAGAGGGGAGGAGAGGAGCTAGTGAGGGAGGAGAGTGGAGAA
GGGGAGTGNAGGGAGAGCGAGGAGGCGATGATXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TCATTGCAGTTTTGACTATCAGAAAAGAGCTTTATAATTACTATAATTTT
AGGAATTCTTATAGGGTTATCATTAATAATCAAGAAATCATCTACTTGTC
TATACAATATTACTAAAAGACAGTACATCTTTGTTCTATAGAGATCTACT
CAAAAGGGTGGGCTAATATCTAGTGATATATATATATATATATATATATA
TATATATATATATATATATATACATACACACACACACACACACACACACT
TTCTCACACACTCACACAGAGGAAAAGCATATTAGTAGCAGGAATCTTTC
CTATAATGAGATTCTCCTAGGCCTTGCCTACAGGAGCAAATCCATCATAG
ATTTTGTTCCAAGATGTACCCATCCCAGGAAGATCACCTGCTAGTTTTAG
CTTCTCCTTATCGGCTCCTGACAAATGTATCCTGACTGTGTATGGGGTTA
TCTTGTTTTTCTGACCTCTGGTTTGTGTATAGTTGTGGTATTCTGGTTAC
CGTTCTTATTTTGGTGCTTATGACATGTCTTATCTCCTCATTTATCCTTA
TTTTATTCGGCCTGTTTATGCAAATCTATTTCACCTGTTTGATCAATGTG
ACACTCTCCTCGGTATTTTTCTGCTCTCCTACTACTGGCCAACCCTCCTT
TATCCGCATCCGTCATTAAACGTTTCTTGCAATCTGTTTATTTTGTGTTC
TGGAGTGTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_g04.b1 MSMg01no373_g04.b1 CHROMAT_FILE:
MSMg01no373_g04.b1 PHD_FILE: MSMg01no373_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:20 2005
         (600 letters)



>mm_chr15_92470810_92471810
          Length = 1001

 Score = 1102 bits (570), Expect = 0.0
 Identities = 588/594 (98%), Gaps = 1/594 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattctgtcctt-ttccacttcttctcacccttcccccaacctcccatgaagatatatt 66
           ||||||||||||  || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 208 gaattctgtcctaattacacttcttctcacccttcccccaacctcccattaagatatatt 267

                                                                       
Query: 67  gtctaggacacatgcaggagatctgttcgcagctatcttttacatagaactgattgttta 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gtctaggacacatgcaggagatctgttcgcagctatcttttacatagaactgattgttta 327

                                                                       
Query: 127 attgcagattaaagattaatgcaagtataatgattccacgaggacacttcacacaaaagc 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 attgcagattaaagattaatgcaagtataatgattccacgaggacacttcacacaaaagc 387

                                                                       
Query: 187 atcctgcatcgggctgcctgcctccatttttcaatttgaccataaatttggctgggaatt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atcctgcatcgggctgcctgcctccatttttcaatttgaccataaatttggctgggaatt 447

                                                                       
Query: 247 aaatagtaagtagccgtgattgcaactctggtctctgaaggcactcacgggaatgaaaat 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aaatagtaagtagccgtgattgcaactctggtctctgaaggcactcacgggaatgaaaat 507

                                                                       
Query: 307 aaatgaacaggctctcacacaaagcatgtttcattatggtcattagtgggcagattctca 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aaatgaacaggctctcacacaaagcatgtttcattatggtcattagtgggcagattctca 567

                                                                       
Query: 367 gcagtattgaaggtgaaattgtctcggagagttgttggcacatctgttaggaagagccag 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gcagtattgaaggtgaaattgtctcggagagttgttggcacatctgttaggaagagccag 627

                                                                       
Query: 427 aagcaggctacaaaggacggaagtggtgtcggttggaaaacgcatgcaatgtacttttga 486
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 628 aagcaggctacaaaggacggaagtggtgtcggttggaaaacgcatgcaacgtacttttga 687

                                                                       
Query: 487 aactttagctcctttgtgtctttccattcttttaaaggcatcaagcgttagcagtaggct 546
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 688 aactttagctcctttgtgtctttccattcttttaaaggcatcaagcgttagcagtaagct 747

                                                                 
Query: 547 aatgatacagaagcgtgcatatttgcttgagtatgtattttaaattggcacaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 aatgatacagaagcgtgcatatttgcttgagtatgtattttaaattggcacaat 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1001
Length adjustment: 10
Effective length of query: 590
Effective length of database: 991
Effective search space:   584690
Effective search space used:   584690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)