BAC Information

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BAC

Clone NameMSMg01-373G19
Chromosome15 (Build37)
Map Location 33,212,272 - 33,212,797
singlet/doubletsinglet
Overlap genePgcp
Upstream geneSema5a, LOC100040962, Sdc2
Downstream gene1700084J12Rik, Tspyl5, LOC675463, Mtdh, Laptm4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373G19.T7 (MSMg01no373_g19.b1)MSMg01-373G19.TJ (MSMg01no373_g19.g1)
ACCAG479458AG479459
length715929
length of high quality
(start - end)
536 (16 - 551)---
definitionCHROMAT_FILE: MSMg01no373_g19.b1 PHD_FILE: MSMg01no373_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:22 2005CHROMAT_FILE: MSMg01no373_g19.g1 PHD_FILE: MSMg01no373_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCACTATTTCCAGAGGATCCGCGGAATTCCATGTGAATAGTAAATTC
TGCACACCTTTTATACATCTCCTCATTCTATTTTGTCGAAAAAGTATTTA
CTCCTCAAAGAAACTTTTTATTCCATTTCATATACTAGGGGATTAATTGA
AACTATGGGAAACGAATGAAGGAACAGACTCTGATTCCTCAGAACTCTGC
AATAGACCTACCCCCAAAAATCTGCCTAACTCATCATTATTAGTCAGTTT
AAGGCTATTTAGAAAAGGATGTTTGGAGAAAGGAGTAGATAAATAGGAGA
ATAAGGCATTAGAGCTGTCAATGAAACTCCAGACTCTGAGAATACAAAAG
CAGTGAAATTTCCTCCTTCTCTCCCTCCGCCTTCCTTCCCACCCTCTCCC
TGGCCCACAACCCTTCTCCTTCCTGCCCATCTCACTTTTCTTCCTCCTTT
CACCATTGCTTTCAGGAAGTCTCTCTCTGGATAGTGGGGTCAGTACTAAA
GCTCAAGGTTCTCCCAAGCAGCCTGCCAGCCCTGTAACACCACACCAGAC
TACTGTCTTTTTCAATTAAAATCAGAGAGTTGCTGGAACATGCCTCAGTG
GTTAGAGTGCTGACTGTTCTTCAGAAGACTGAGTTTGGTTCCCAGTACCC
TGATCCAGTGCTTGCATTTGCCGAAACTCCACTGGCAAGATTCAAACCTT
CTCCGGTGTCCCTGG
TCGTTCGCCCGTCGTACGTGTNTCCGCCGCTGTTGTCGCCCACTTATGGT
ATACTGTCTATCTCCTATTACTTACTTTCTGATACTTTTGTCTTCGCTGC
TGCGTTCTGGCGCTCCTCCCTGAGTGTGNTGGTCGACTTTTTTAGAGGAT
CTCCCTGCTAGATCCCTCACTATGTTCCGTGGATTTCTTTTCGGTGTCAC
TGATTTCCGGAGGGGCGCCGCCCCGGACTATCNTATTTTTTTTTTGCGCC
CCAAAAAGGGAAAAAAAAGGGGGGGGGATAAGGGGCCCCCTGGAGGNCGG
GNNGCCCCCGGCCCCCTTGGGGTTTTCTCCTCCGNAAAAAATGTGTAGGG
NTGGNAACAACNTAATNAAGGNAAAAGGGTTATTCCCCGCCCGGGNAAAA
TTTTCCAACTTTTCAATTGGCCCCTNCTNTGGGGAATTTAAACCTTTCTT
TTTTTAATAGGGCCTTTCCCTTCCCAGGAAAAGGAAAAATTTTTAAATGG
GAAAAAAACCCCCCAACCTGTGTGCCCCAAANNCCAAAAACCCCCATTTT
TGCNCCTCCAATCCCTTCCTAAAAAAATTTTTAAACCAAAAACCTTTAAA
TTTTAAAAAAAATTTGGGAAAAAATTATGGGGGGGGGAAAAAAATTTTTN
NAAAAAGTTAGAAGAAATATAACGNGAGAAGGGGGAAAAANAAATATAAA
TTTTTTTAACCCCCCCCCCCCCTCTTTTTTTTTAAAAAGCACCAACCCCC
CGGGGGGGGGGGAAAAAAAAAAGGGGGGGGGGCCCCCTGTGGGAAAAAAA
AAAAAGGTTTTTTTTTTCCCCAAGGGGTTTAAATAAAACAATTCCCCCGG
GGGGGGGGGATAAAAAGGAAAAAAACCCCTCTTTTAAAAAAAANTAAGGG
TGGGGAGAACCCCCCCCAAAAGGAGGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_g19.b1 MSMg01no373_g19.b1 CHROMAT_FILE:
MSMg01no373_g19.b1 PHD_FILE: MSMg01no373_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:22 2005
         (536 letters)



>mm_chr15_33212062_33212997
          Length = 936

 Score = 1002 bits (518), Expect = 0.0
 Identities = 524/526 (99%)
 Strand = Plus / Plus

                                                                       
Query: 11  ggaattccatgtgaatagtaaattctgcacaccttttatacatctcctcattctattttg 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 ggaattccatgtgaatagtaaattctgcacaccttttatacatctcctcattctattttg 270

                                                                       
Query: 71  tcgaaaaagtatttactcctcaaagaaactttttattccatttcatatactaggggatta 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tcgaaaaagtatttactcctcaaagaaactttttattccatttcatatactaggggatta 330

                                                                       
Query: 131 attgaaactatgggaaacgaatgaaggaacagactctgattcctcagaactctgcaatag 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 attgaaactatgggaaacgaatgaaggaacagactctgattcctcagaactctgcaatag 390

                                                                       
Query: 191 acctacccccaaaaatctgcctaactcatcattattagtcagtttaaggctatttagaaa 250
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 acctatccccaaaaatctgcctaactcatcattattagtcagtttaaggctatttagaaa 450

                                                                       
Query: 251 aggatgtttggagaaaggagtagataaataggagaataaggcattagagctgtcaatgaa 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aggatgtttggagaaaggagtagataaataggagaataaggcattagagctgtcaatgaa 510

                                                                       
Query: 311 actccagactctgagaatacaaaagcagtgaaatttcctccttctctccctccgccttcc 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 actccagactctgagaatacaaaagcagtgaaatttcctccttctctccctccgccttcc 570

                                                                       
Query: 371 ttcccaccctctccctggcccacaacccttctccttcctgcccatctcacttttcttcct 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ttcccaccctctccctggcccacaacccttctccttcctgcccatctcacttttcttcct 630

                                                                       
Query: 431 cctttcaccattgctttcaggaagtctctctctggatagtggggtcagtactaaagctca 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 cctttcaccattgctttcaggaagtctctctctggatagtggggtcagtactaaagctca 690

                                                         
Query: 491 aggttctcccaagcagcctgccagccctgtaacaccacaccagact 536
           ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 691 aggttctcccaagcagcctaccagccctgtaacaccacaccagact 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)