BAC Information

Click to search

BAC

Clone NameMSMg01-375N14
Chromosome15 (Build37)
Map Location 72,091,780 - 72,250,686
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383051, 1700010C24Rik, LOC100040847, Col22a1
Downstream geneKcnk9, 1810044A24Rik, LOC665621, Peg13, LOC100041120, Chrac1, Eif2c2, Ptk2, LOC666053
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375N14.T7 (MSMg01no375_n14.b1)MSMg01-375N14.TJ (MSMg01no375_n14.g1)
ACCAG481305AG481306
length790792
length of high quality
(start - end)		477 (50 - 526)413 (79 - 491)
definitionCHROMAT_FILE: MSMg01no375_n14.b1 PHD_FILE: MSMg01no375_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:34 2005CHROMAT_FILE: MSMg01no375_n14.g1 PHD_FILE: MSMg01no375_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,091,780 - 72,092,252)(72,250,274 - 72,250,686)
sequence
NNNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAAAGTCTATTATTCCAAAGTCTTTGTTTCAGGCTCCCTTT
GTTCCATTAAATGTTTGGGGTTTGACCCATCCTCTTTCCTTGGCAAGTTG
TGTTTATTAAGCCCTGCCTTGCTTATTTATGCACCAGTGATGGGACTGCT
CCTTTCATAAGCCCAAGGGGAGACACAGCCTCAGCTTTCATGTGAAGCTA
TAGTAGGGAAGAAAATGTGTTTAGTCCGGATGAAATGTACCTCAGTCTAA
CCTTGAGATTGTGGCACTGACATTAAACAATGACACAGATAACATGTTTT
CAGCTCAGAGATTTAAGAGACATTTACGGACACATAAAAAGCCATCCACT
CATCATTGCAAGTGTTTCACTGATGCTTGGACGTGGAATATTTTTCAACT
CAGGCAGCACAGGCATTCCTGCTGACGAGCACCTAGCTTTCTGCTTGTGG
GTCTCATCATTTGTTTTACTACCAGATTTTCCATAATGGACTCGTGCCTA
CTGCCTTAACCAGAAAGTTTTTATTTGTCCGCTTAAAATTTTTTTTTAAA
TTCCTTTTTTTTCCCCCTATAAACCACTTGGGGTCACCACAAAAAACCGA
AAATCCCGGGTCTGAAAAAATTTGTTGTTCCATGGGCTCTATAAGCAAAA
AAAACGAAGTTTTTCTAAAAAATTATCCCCATTTAATTCCCTTTGGTGAA
AACCATGCTCTTTTATTTTCATATACAATTGTTTCTTTCT

NNNCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAATTGACATCTCCAAGGCCA
TACAATTTTGAGTGTCTGTAAAAGGCAACAGAATTGGAAATCTTGAATTT
CTTGTCTAGATATCCAGTCTCATGGACCAAACAACTTCCAGATTCTTGTC
CTTTCCATCAGGAGATGGCCACTAGTGGGCTAGCAAGACCATAGCCTGTA
AGCTCCATTAATAAACTCCTATCAGTTTGTTGTTTTAAACAAATCTAACT
AAAACACTCATCTTCTTATAGATTGTCCCCAAAACTTCATGCATCTGTCC
TCCTTATTGCCTATGATCTTTCATGATCAATAGCCCAAGCCACCATAGCT
TCACAGCATGTCCCAGGCATCAAGCAAGTTCTACCAAGTTAACATATGGC
TCTGGTCTCAGGGGTCAAAGAAGAGCTATCAAGTTAAGATCTGTAGAATG
GTGTAAGCAGGNAATATATATATATATATATATATGGATATATATATATA
TATGGATNTTTTNNNNNTNNTTCTTTTAAACATTTATTATATATAAATTT
TTCCTTTTACATTTTACATTCTTTTCTTCTTAATCTATCCCCTATACTCT
TCAACATTCCCCCCTAATTTCACCTACACAACTTTCCTTCCTCCTATATC
ACCTAAACAGTACTCATTCTTCACTCTAATCAAATAATCTATTATTTTTT
CTAATCTACCATTTCATATACGTATGTGACCTTTTTTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_n14.b1 MSMg01no375_n14.b1 CHROMAT_FILE:
MSMg01no375_n14.b1 PHD_FILE: MSMg01no375_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:34 2005
         (477 letters)



>mm_chr15_72091576_72092452
          Length = 877

 Score =  907 bits (469), Expect = 0.0
 Identities = 472/473 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaagtctattattccaaagtctttgtttcaggctccctttgttccattaaatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaagtctattattccaaagtctttgtttcaggctccctttgttccattaaatg 264

                                                                       
Query: 65  tttggggtttgacccatcctctttccttggcaagttgtgtttattaagccctgccttgct 124
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttggggtttgacccatcatctttccttggcaagttgtgtttattaagccctgccttgct 324

                                                                       
Query: 125 tatttatgcaccagtgatgggactgctcctttcataagcccaaggggagacacagcctca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatttatgcaccagtgatgggactgctcctttcataagcccaaggggagacacagcctca 384

                                                                       
Query: 185 gctttcatgtgaagctatagtagggaagaaaatgtgtttagtccggatgaaatgtacctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gctttcatgtgaagctatagtagggaagaaaatgtgtttagtccggatgaaatgtacctc 444

                                                                       
Query: 245 agtctaaccttgagattgtggcactgacattaaacaatgacacagataacatgttttcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtctaaccttgagattgtggcactgacattaaacaatgacacagataacatgttttcag 504

                                                                       
Query: 305 ctcagagatttaagagacatttacggacacataaaaagccatccactcatcattgcaagt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctcagagatttaagagacatttacggacacataaaaagccatccactcatcattgcaagt 564

                                                                       
Query: 365 gtttcactgatgcttggacgtggaatatttttcaactcaggcagcacaggcattcctgct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtttcactgatgcttggacgtggaatatttttcaactcaggcagcacaggcattcctgct 624

                                                                
Query: 425 gacgagcacctagctttctgcttgtgggtctcatcatttgttttactaccaga 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gacgagcacctagctttctgcttgtgggtctcatcatttgttttactaccaga 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no375_n14.g1 MSMg01no375_n14.g1 CHROMAT_FILE:
MSMg01no375_n14.g1 PHD_FILE: MSMg01no375_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:34 2005
         (413 letters)



>mm_chr15_72249879_72250691
          Length = 813

 Score =  752 bits (389), Expect = 0.0
 Identities = 407/413 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaattgacatctccaaggccatacaattttgagtgtctgtaaaaggcaacagaattgga 60
           |||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 808 taaattgacacctccaaggccatacaattttgagtgtctttaaaaggcaacagagttgga 749

                                                                       
Query: 61  aatcttgaatttcttgtctagatatccagtctcatggaccaaacaacttccagattcttg 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 748 aatcttgaatttcttgtctagatatccagtctcatggactaaacaacttccagattcttg 689

                                                                       
Query: 121 tcctttccatcaggagatggccactagtgggctagcaagaccatagcctgtaagctccat 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tcctttccatcaggagatggctactagtgggctagcaagaccatagcctgtaagctccat 629

                                                                       
Query: 181 taataaactcctatcagtttgttgttttaaacaaatctaactaaaacactcatcttctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 taataaactcctatcagtttgttgttttaaacaaatctaactaaaacactcatcttctta 569

                                                                       
Query: 241 tagattgtccccaaaacttcatgcatctgtcctccttattgcctatgatctttcatgatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tagattgtccccaaaacttcatgcatctgtcctccttattgcctatgatctttcatgatc 509

                                                                       
Query: 301 aatagcccaagccaccatagcttcacagcatgtcccaggcatcaagcaagttctaccaag 360
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aatagcccaaaccaccatagcttcacagcatgtcccaggcatcaagcaagttctaccaag 449

                                                                
Query: 361 ttaacatatggctctggtctcaggggtcaaagaagagctatcaagttaagatc 413
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttaacatatggctctggtctcaggggtcaaagaagagctatcaagttaagatc 396


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |