BAC Information

Click to search

BAC

Clone NameMSMg01-375P14
Chromosome15 (Build37)
Map Location 26,903,093 - 26,903,584
singlet/doubletsinglet
Overlap genenone
Upstream gene1810015C04Rik, Zfp622, AK162044, Fbxl7, LOC622531
Downstream geneLOC625311, Ank, BC087945, LOC100040622, BC052328, Trio
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375P14.T7 (MSMg01no375_p14.b1)MSMg01-375P14.TJ (MSMg01no375_p14.g1)
ACCAG481401AG481402
length758761
length of high quality
(start - end)
149 (269 - 417)494 (75 - 568)
definitionCHROMAT_FILE: MSMg01no375_p14.b1 PHD_FILE: MSMg01no375_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:44 2005CHROMAT_FILE: MSMg01no375_p14.g1 PHD_FILE: MSMg01no375_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTATAACTTGGGGCCGCTNTACGACTCACTATTTCCAGAGTATCCGCG
GAATTCACTTGATATGGACTCACTGATAAGTGGATAGTAGCCCAGACACT
TAGAATACCCAAGATACTATTTGGCAAACACCAGAAAATCAAGAAAGAAG
GAAGACCAAAGTGTGGACACTTTTACCCCCTCTTAGAATAGGAAACAAAA
ACACCCATGGAAGGGAGTACAGAGACAAAGTTTGCAAGTAAAACTAAGGG
AGACTACCCCACCCTGGAATCGATCCCATAATCAGCTGACTATATATTCT
TAAGTCTCTGGCCACCCACGGGACAAGATCAGCCTAACAGAGGTCACACA
TTAAAAAACAATGCAAAGTAAAACAAAACAAAACAAAACCCTGACTTTCC
TTTTGGTAGCTCTCAACCCCCACCAGTTCTACAGCTAGGATTTGGATTTG
GTGACCACCTCCCATCTCTGGGCTGGGATTTGTCTAACTTGAACTATGAC
TTCATATGAGCAACCGCTCTGTTGTGTACAAACCCGAGCTTTGTTTTAGT
CACCCACCATCTCTGTGTCTGATCGTCCTTCTTTCTATTCTTCCACAATG
TTCTCCGTATCCTTGTTATCAACGTCTGCCGATTTATCCGTACCCCTATT
GTTCGATCACTCCGCATATTTGCCCTTTTTCCCCCTTTTGATCCACTTCT
TCCGTACCCGACTTACTATACCCCCACTCCCCTTTGCTTCTTTACGTTTC
TTCTTGCT
NCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGGATGAAGTATGGTGATCTCTGGAT
GGATAAACCAAAGCATCCAAGGATATAGCTGAAGCTCTTTTACAAATTTA
AATCTGGCTTAAAGTAAGAAATTAAAGTAATATTTCCACATTGAATGAAT
GGTAATTCACCATGATTTTGCTATGGGGATAAATCCTTCCCATAAGTTTG
AAATTATTCAAATGGGACCATCCTCCATAATTAAATTCTACTTTCTTATA
AAAGAAAGAAGGGAAATCATGTGGAAGGATTATGAAGGTCTCGGGAAGCA
CTGTGAGCTCACCAGCAGGCAGCTTAGGGTCTGGTCTTTATTCAGGCACA
CACTGTCTAAGAAAGAGCATTAGTTTGTCCAATTTTGCACCGAGGCAAGG
TGAAGGTAGAACTTACATAACCAATAACATTTGATTGGTGTCAAATGAAA
ATGTTGAAAAGCATCCAACTATTGATGTGAAAGTCTGACCTGATAAAATA
GACTTTTAAAGCTTTAGACAATATTTGGGCTTTGTTTTTAGCCTCATTCA
GGGAAATAGAGCTGTTGTACATGACCTTTTTAATAAGTGGATATGTTGTG
TTCCAATGCCACCCTTAACGGTTTTTCATTTTTCCGAAAAAAAAAAAAAG
CCCCGCAGGCTATATTTACCTTTCCCAAAGCCCAATAACCACCTTCTCTT
TCAATACTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_p14.g1 MSMg01no375_p14.g1 CHROMAT_FILE:
MSMg01no375_p14.g1 PHD_FILE: MSMg01no375_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:44 2005
         (494 letters)



>mm_chr15_26902888_26903781
          Length = 894

 Score =  893 bits (462), Expect = 0.0
 Identities = 484/492 (98%), Gaps = 2/492 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggat--gaagtatggtgatctctggatggataaaccaaagcatccaaggatatagctga 58
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 aggatgagaagtatggtgatctctggatggataaaccaaagcatccaaggatatagctga 638

                                                                       
Query: 59  agctcttttacaaatttaaatctggcttaaagtaagaaattaaagtaatatttccacatt 118
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 637 agctcttttacaaatttaaatctgtcttaaagtaagaaattaaagtaatatttccacatt 578

                                                                       
Query: 119 gaatgaatggtaattcaccatgattttgctatggggataaatccttcccataagtttgaa 178
           |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gaatgagtggtagttcaccatgattttgctatggggataaatccttcccataagtttgaa 518

                                                                       
Query: 179 attattcaaatgggaccatcctccataattaaattctactttcttataaaagaaagaagg 238
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 atcattcaaatgggaccatcctccataattaaattctactttcttataaaagaaagaagg 458

                                                                       
Query: 239 gaaatcatgtggaaggattatgaaggtctcgggaagcactgtgagctcaccagcaggcag 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gaaatcatgtggaaggattatgaaggtctcgggaagcactgtgagctcaccagcaggcag 398

                                                                       
Query: 299 cttagggtctggtctttattcaggcacacactgtctaagaaagagcattagtttgtccaa 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cttagggtctggtctttattcaggcacacactgtctaagaaagagcattagtttgtccaa 338

                                                                       
Query: 359 ttttgcaccgaggcaaggtgaaggtagaacttacataaccaataacatttgattggtgtc 418
           ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 337 ttttgcaccgaggcaaggtgaaggttgaacttacataaccaataacattttattggtgtc 278

                                                                       
Query: 419 aaatgaaaatgttgaaaagcatccaactattgatgtgaaagtctgacctgataaaataga 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aaatgaaaatgttgaaaagcatccaactattgatgtgaaagtctgacctgataaaataga 218

                       
Query: 479 cttttaaagctt 490
           ||||||||||||
Sbjct: 217 cttttaaagctt 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)