BAC Information

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BAC

Clone NameMSMg01-377H09
Chromosome15 (Build37)
Map Location 99,387,036 - 99,610,850
singlet/doubletdoublet
Overlap geneAqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1
Upstream geneCcnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137
Downstream geneLOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377H09.T7 (MSMg01no377_h09.b1)MSMg01-377H09.TJ (MSMg01no377_h09.g1)
ACCAG482536AG482537
length788778
length of high quality
(start - end)		436 (51 - 486)271 (80 - 350)
definitionCHROMAT_FILE: MSMg01no377_h09.b1 PHD_FILE: MSMg01no377_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:38 2005CHROMAT_FILE: MSMg01no377_h09.g1 PHD_FILE: MSMg01no377_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,387,036 - 99,387,468)(99,610,580 - 99,610,850)
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGTATCTCCCTGCGGGGTGCTGGCTGATGTTGGTCATGGG
AATAGACACCCAAGTTCTAGGCCATGCTGTCTGCTGAACCTCAGCTCCCC
CATTGGTCTGGAGAGTGTGAGCGTTCTTGGGACAGAGCAGGACACAGGTC
AGAGTGGGAGCCAGTCTGACCTGGGTTTCAGAGCAGTGAGTGTTCCTGTA
GGTGCCATGGAACACAGGTTGCTTTCCCCATCACAGAAGAGAGCTCAGAA
GCAGTAGTCTTCTGTGTGACATACTCCTGGCTTATTGGGACTCTTCTAGG
ACCTTGAGGAGACCTTAGCCACATTCCCACAGCCATGGAGTTTTGTGAAC
CTTGCCATTGGCTGTTTGTGTCTGTGAGAGCTCTCCTCAGACGGTACATA
CTTCAGACATGCACACTGGAAGGAGCACTGAATTTCTTATACCAGCTGTG
TAACCCCCAGCTTATTCTTGTGGGTTGTCTGAAGACCTGACATATCCCGT
GCTGAAATACTTAAGGTGGTTGCAAACTTTCCCCCCTCGTTCCTAATTTT
TTTTTGCTTCTTTGTCTTTCTTGCTTTTTTTTCATTCTTCCACAATTCGC
GGTTTGTTTTTTCTAATTTTCATTTCCCACCAGTTAATTTCCTCTATCGT
TCCCCCTTTCTTTTTTCCATATTCTCCTTCTTCTCTTTTCTCTTTCCCTT
TCCTTTTTTCTCCTTCCATTATCACCTTATTCCTCTCG

TTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTACCCAGAATCAAAAATCC
CAAGATGTCGGGTTCTGGGAGGGAGAAGTGGTCCGAGAGCTGTCTGTGGA
GGAACAGATAAAGAGAAACCGGTACTATGATGAGGACGAGGATGAAGAAT
GACCGGCCGCCATGGTGCTGGCCTTAGATTTTGGTTAGCAACTCACTGCC
CTTTATCAAGTGGTGCGCAGAAACAGGCAGCTTGGCGCTAAGGGTCATTC
ATGTGGAAGCAACTTTGGAAATGAATTCCTGCTAGCAAAACAGGGCAAAA
ACAAGCAAAAACAAAACAGACAAACAAACTCACCCAAAACCAATTCTAAG
TGCATTGTCAAAACACCGGCGATCTTTTAAGCCTGGTGTGGTGGTAAACA
CCTTTAATCCTCAGCCCCCATTCGGGATGGTTAGGCAGAGGCAGGTGGGT
CTTCTCTGAGTTCTTGGATGCCAGGGCTATCCATAGAAATCTTGGCTTTT
AACAAATAAACTATAACATCCCCCCATTTTTGCCGCGAAGGTGCTTACAT
TGGTTTTCTTTTTCCTGAGCTTGCTGGTCCCCCCCCGTTTTTTCTCCCCC
CTATTCTTTTTTGCGCTTTTTTCACCACACCTACTTTCCCCCCCTCTCCC
TTTTTTCCTCTTTCCCTTTATCTCCCCCTCTTTTCTCCCCCATCTCCTCA
TTTTTTTCTTTATTTCTTTCCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_h09.b1 MSMg01no377_h09.b1 CHROMAT_FILE:
MSMg01no377_h09.b1 PHD_FILE: MSMg01no377_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:38 2005
         (436 letters)



>mm_chr15_99386833_99387668
          Length = 836

 Score =  760 bits (393), Expect = 0.0
 Identities = 423/433 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgtatctccctgcggggtgctggctgatgttggtcatgggaatagacacccaa 63
           ||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||
Sbjct: 204 ggaattctgtagctccctgcagggtgctggctgatgttggccgtgggaatagacacccaa 263

                                                                       
Query: 64  gttctaggccatgctgtctgctgaacctcagctcccccattggtctggagagtgtgagcg 123
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
Sbjct: 264 gttctaggccatgctgtctcctgaacctcagctcccccattggtctggagagtatgagtg 323

                                                                       
Query: 124 ttcttgggacagagcaggacacaggtcagagtgggagccagtctgacctgggtttcagag 183
           |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttcttgggacagagcagggcaccggtcagagtgggagccagtctgacctgggtttcagag 383

                                                                       
Query: 184 cagtgagtgttcctgtaggtgccatggaacacaggttgctttccccatcacagaagagag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cagtgagtgttcctgtaggtgccatggaacacaggttgctttccccatcacagaagagag 443

                                                                       
Query: 244 ctcagaagcagtagtcttctgtgtgacatactcctggcttattgggactcttctaggacc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctcagaagcagtagtcttctgtgtgacatactcctggcttattgggactcttctaggacc 503

                                                                       
Query: 304 ttgaggagaccttagccacattcccacagccatggagttttgtgaaccttgccattggct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttgaggagaccttagccacattcccacagccatggagttttgtgaaccttgccattggct 563

                                                                       
Query: 364 gtttgtgtctgtgagagctctcctcagacggtacatacttcagacatgcacactggaagg 423
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 564 gtttgtgtctgtgagagctctcctcagacggtacaaacttcagacatgcacactggaagg 623

                        
Query: 424 agcactgaatttc 436
           |||||||||||||
Sbjct: 624 agcactgaatttc 636


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no377_h09.g1 MSMg01no377_h09.g1 CHROMAT_FILE:
MSMg01no377_h09.g1 PHD_FILE: MSMg01no377_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:39 2005
         (271 letters)



>mm_chr15_99610380_99611050
          Length = 671

 Score =  493 bits (255), Expect = e-144
 Identities = 267/271 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actacccagaatcaaaaatcccaagatgtcgggttctgggagggagaagtggtccgagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 actacccagaatcaaaaatcccaagatgtcgggttctgggagggagaagtggtccgagag 412

                                                                       
Query: 61  ctgtctgtggaggaacagataaagagaaaccggtactatgatgaggacgaggatgaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ctgtctgtggaggaacagataaagagaaaccggtactatgatgaggacgaggatgaagaa 352

                                                                       
Query: 121 tgaccggccgccatggtgctggccttagattttggttagcaactcactgccctttatcaa 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tgaccggccgccatggttctggccttagattttggttagcaactcactgccctttatcaa 292

                                                                       
Query: 181 gtggtgcgcagaaacaggcagcttggcgctaagggtcattcatgtggaagcaactttgga 240
           ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 291 gtggtgcgcagaaacaggcagcttggcgccaagggtcattcatgtgggagcaactttgga 232

                                          
Query: 241 aatgaattcctgctagcaaaacagggcaaaa 271
           |||||||||| ||||||||||||||||||||
Sbjct: 231 aatgaattcccgctagcaaaacagggcaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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