BAC Information

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BAC

Clone NameMSMg01-378A20
Chromosome15 (Build37)
Map Location 18,411,267 - 18,411,689
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040162, LOC666835, LOC666839
Downstream geneCdh10, EG666857, EG666875
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378A20.T7 (MSMg01no378_a20.b1)MSMg01-378A20.TJ (MSMg01no378_a20.g1)
ACCAG482990AG482991
length1,192769
length of high quality
(start - end)
---421 (80 - 500)
definitionCHROMAT_FILE: MSMg01no378_a20.b1 PHD_FILE: MSMg01no378_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:26 2005CHROMAT_FILE: MSMg01no378_a20.g1 PHD_FILE: MSMg01no378_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAAAGACTTAATTACGGNCTTCCTGTCTCTATTATCTTCCTCTTATCCC
CCCACGATGCTATGTGTATGAATCACTCTTTAAGAGTGGTATATTAAGAA
ACGTACCGGCGCGCCCGATGAGGCTTTGCTCTTGCCGGCTGGATCGCGCA
GAACGGATAACGGCCGGGGGATGAGAGGAGGAGAGACGGGTGCAGGGAGT
GGGGCGCAGACGCTGGCGGGGGGCGGCAGGGTAGGTCGTGGCACAAAATA
CACGCCCCACAACCGACAACCCACCCCTCACATAAATCTATACCTCCCCC
TCCCACGGCGTAATAATTATAAGATAATGCGGCACCGCAAGCCTCTTCCA
TACTGGTATTGCGCGGTGGCGTGGACGGGAGTACGGAGCTAAAGTCAATG
AAACGCAGTGTAGATGTAAAATAATCTGTATAGGCAGTATACTAGAAATA
ATATATAGAACTGGCTGCGACAACAATAACGACCACCAGAAGACGATAAT
GACAATATCTGAGACGCATCGGCCGAATACACGCTAACAAAGTAAGAAAA
TGGGAGCGATTAGACGGGCAGTGGCTGCCTCATCTATTGAATTTCAGACT
AGTGATCGCGATCTATGTAATTTGCACCTTTATAAACCGTATTTAAATGC
AACATAGGTTCACGCGTATAACTAGTCGGGGTGACTTATATGGTACAGGG
TGCCGTGACGCGCGAGCCGATAAGTGCGGTAAATATTACGCGCCTCATGC
TTGTTATTTTTCTCCTTAACTCACGCATGTTGTAATATGGTTGAGAGCAC
GAATATAAGCGCGTAGCGGTAGGTGGTGCGAGTTACGCGTCGATTTATAT
ATCGTTCTGGTTTACGGCGCTGTCTTTGTTTATATGATCACACCGCACTA
GCTGCTGTCAGTGATTAATTCGCCCAGCACATCGACAAGAGTAGGTGCGT
TGATGATCCGCCGGACAGACAATGATAATGAGATATAAGGAAAATGAACA
ATCGCCTGCGTGCGTATCGCGAAATCGGGAATGTACCACAAACCTAGTCA
ATATATCATGTAATAACGGACTAGCGACCGCTTGATTCAGACACCAGTGC
ACGCTGTGCGTCGAGACGGTATACGTAATATATTATCGCGACACGCGACG
ATCGTTCAAGGCAACGGATGAGCGACCGGCGGAAGCGCGCGC
NNCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCACTAGCACAAACTAATAA
AATTCTAAAAATAAAAAAAAAATACTAGATTCCATCACTAAGTCCAGGGT
GTGACCACAACACTGCAGATATGAGTCCTGTGGTAAGTATCTGAAATACT
TCCTGTTACAGATTGGTCAAGCAGGTGCCAGCTTTGATCCCGGAAATCAA
GCAAATAATGCAGCCACAGCAGCAAGACTAAATGTAAGCTTGAGCCTCAA
AGGAGGACGATATTCAACCTGCTGACTGCACAAGAGCAAGGACTACAGAT
GAATGTCAATAAAGCTTCAATAAGATACCCGACCAGGCTTTCTTCAGTAC
CAACACTCAGACAAAATCCTAACAGAGACATTTCCTCACACAGGTGACAC
CTGCTCAGAGAAAAATCAAGGAACCAAGTAATTAAAAACAAAGAAAAATA
TTTGAGACAGGGGAAGTCATTTCTAAAGCGCTGGGGGAGACAGATTTCTG
GGGGGATTCCTTTTGGTTGAAACCCAGGAAATACTGGTAATTAAAGAAAG
AAATAATCCTTGTAGGGCTGGTACTAAAGATTTTTAAAACTTCCAAAAGG
GTTTATTCTAAAAAATGTTGGGCTGGGGAGCAAAAGAATTTTTATTCCTT
TTAATTTGACCATTTTTTTTGTGCGGGTCCCTTTTTTTTTTTTATAAAAA
AATATTGGGTTCTTTCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_a20.g1 MSMg01no378_a20.g1 CHROMAT_FILE:
MSMg01no378_a20.g1 PHD_FILE: MSMg01no378_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:27 2005
         (421 letters)



>mm_chr15_18411069_18411889
          Length = 821

 Score =  791 bits (409), Expect = 0.0
 Identities = 419/423 (99%), Gaps = 2/423 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcactagcacaaactaataaaattctaaaaataaa--aaaaaaatactagattccatca 58
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 199 ctcactagcacaaactaataaaattctaaaaataaaataaaaaaatactagattccatca 258

                                                                       
Query: 59  ctaagtccagggtgtgaccacaacactgcagatatgagtcctgtggtaagtatctgaaat 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctaagtccagggtgtgaccacaacactgcagatatgagtcctgtggtaagtatctgaaat 318

                                                                       
Query: 119 acttcctgttacagattggtcaagcaggtgccagctttgatcccggaaatcaagcaaata 178
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 319 acttcctgttacagattggtcaagcaggtggcagctttgatcccggaaatcaagcaaata 378

                                                                       
Query: 179 atgcagccacagcagcaagactaaatgtaagcttgagcctcaaaggaggacgatattcaa 238
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 379 atgcagccacagcagcaagactaaatgtaagcttgagcctcaaaggaggaggatattcaa 438

                                                                       
Query: 239 cctgctgactgcacaagagcaaggactacagatgaatgtcaataaagcttcaataagata 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cctgctgactgcacaagagcaaggactacagatgaatgtcaataaagcttcaataagata 498

                                                                       
Query: 299 cccgaccaggctttcttcagtaccaacactcagacaaaatcctaacagagacatttcctc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cccgaccaggctttcttcagtaccaacactcagacaaaatcctaacagagacatttcctc 558

                                                                       
Query: 359 acacaggtgacacctgctcagagaaaaatcaaggaaccaagtaattaaaaacaaagaaaa 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 acacaggtgacacctgctcagagaaaaatcaaggaaccaagtaattaaaaacaaagaaaa 618

              
Query: 419 ata 421
           |||
Sbjct: 619 ata 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)