BAC Information

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BAC

Clone NameMSMg01-378K24
Chromosome15 (Build37)
Map Location 93,506,405 - 93,730,282
singlet/doubletdoublet
Overlap geneZfp42-ps1, LOC100042627, LOC100042631
Upstream genePdzrn4, LOC100042552, LOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623, Prickle1
Downstream geneD630010B17Rik, Adamts20, Pus7l, Irak4, Twf1, Tmem117
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378K24.T7 (MSMg01no378_k24.b1)MSMg01-378K24.TJ (MSMg01no378_k24.g1)
ACCAG483476AG483477
length774785
length of high quality
(start - end)		503 (70 - 572)463 (78 - 540)
definitionCHROMAT_FILE: MSMg01no378_k24.b1 PHD_FILE: MSMg01no378_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:14 2005CHROMAT_FILE: MSMg01no378_k24.g1 PHD_FILE: MSMg01no378_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,729,905 - 93,730,282)(93,506,405 - 93,506,867)
sequence
NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACACACATCTAAACCTTCTGTATTAACGAGTTTGACAACTTTG
TCTATTAACTAAAAATATTAGCCCGTACTTATTTGATACCATAGCCACTG
TATTTTGATTCGTTTCTACTTTCTTATTTTGTACTTTCTAAATTTTCTGC
ATTTTCCATGTTTCTCTTAACATGTGTATTTTATCTAACAAACATATGTG
TTTAATCAAAAATTCTAAAGGCAGTCACATGTATATTGTAGAAATATAAA
TTCTCCCCTTATTATTTTAATCATTAACCTAGAAATGTTAACATGTGCAT
TTAATTTAATAAATGCTAAATAAAACTAATAAAATACGTTTACCAGAATA
TTTTGGTTATATCATTATTACACCCATGAAATTAGACATTGTTGTTACTG
TTTATACAAATGGTTCTCGTTTATCTGTTCTTACATATTTGGAGTGCTAT
TGATGAAAATACATCAGTGTTATTTGCCTGAAAAAAGTATATTATGTTCA
AACTTTAAAGGCAATTTTTTTCTGGGCACAGAACACTAGACTAGTGATCT
TATTTTTTGTAGCGCCATTGTCACAGAGAATTATGTCGCGCCCGCTCTCC
ACAGCAAGAAACGAACGACCACCCTTCCTTCTACAGAAGGTTATTCAAAC
CCGAATCTTCTTGTTTAAATTTCCCCCAACCCCGGGGCCTCCCCCCTTTA
TATTTCTTCTTCTCCGTCCCCAGG

NCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATACTCTGTCCGTCATTCATAAT
ATGACACGCTCTAGGCCTGACCCATCTCTCGGGATCCCCCAGCGCCAATG
TTCTGCGTCCAGGAGAAGTCATGGGATTTGAAGCAGACACTCTAGCCCCT
ATCTACTTACTGGCTTAGGAGCCTTGTGCAAGGTGCATTTAGAGAATGGA
GATAATTAATAATCATAGCGTCCCTACTGTGTAGGGTTGATGTGAGAACA
AATTAGAGAAAAATGTGTCAATTAGGGCACTCTGAATACTTACACAAATG
TTCACAGTGCGTCATCACCATGCCATCCTCTGCCTGTGAGTTCTGCCGAC
ATTTACCCTACAACAACTATTCGCTGAGCATTGACTAGTCCTGGGGATAC
TAGTAGCTCTCACGGGGGGCCCCTGCTCTCACAGGGATCATCATCTGTGG
GAGAAGCAGACACATGTGTAGCAGGCTATGGGGTGTTCCACGGCGGATGA
ATGTATGGTTGAGTTAAAAGCTCCTATCCTAGACAGAGGAGGTCAGACCA
GTCTTTGTATAACTTGTGGAAAGCAAACATTAACCCTCTCAATCACCCCC
TGGCGAGGAGAAACCTTTATGGTCGGGAAGAATTCTATGCCCCGCCACCC
TAAAAAACATTTGGCTTAAACCTCGTTATTTCTATCCCCCCGGTTTTTCA
AATCTTAAATCTGCGACTCTCCCCGGGGTAAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_k24.b1 MSMg01no378_k24.b1 CHROMAT_FILE:
MSMg01no378_k24.b1 PHD_FILE: MSMg01no378_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:14 2005
         (503 letters)



>mm_chr15_93729380_93730282
          Length = 903

 Score =  716 bits (370), Expect = 0.0
 Identities = 376/378 (99%)
 Strand = Plus / Minus

                                                                       
Query: 126 ttctgcattttccatgtttctcttaacatgtgtattttatctaacaaacatatgtgttta 185
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 ttctgcatttcccatgtttctcttaacatgtgtattttatctaacaaacatatgtgttta 844

                                                                       
Query: 186 atcaaaaattctaaaggcagtcacatgtatattgtagaaatataaattctccccttatta 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 atcaaaaattctaaaggcagtcacatgtatattgtagaaatataaattctccccttatta 784

                                                                       
Query: 246 ttttaatcattaacctagaaatgttaacatgtgcatttaatttaataaatgctaaataaa 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 ttttaatcattaacctagaaatgttaacatgtgcatttaatttaataaatgctaaataaa 724

                                                                       
Query: 306 actaataaaatacgtttaccagaatattttggttatatcattattacacccatgaaatta 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 actaataaaatacgtttaccagaatattttggttatatcattattacacccatgaaatta 664

                                                                       
Query: 366 gacattgttgttactgtttatacaaatggttctcgtttatctgttcttacatatttggag 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gacattgttgttactgtttatacaaatggttctcgtttatctgttcttacatatttggag 604

                                                                       
Query: 426 tgctattgatgaaaatacatcagtgttatttgcctgaaaaaagtatattatgttcaaact 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tgctattgatgaaaatacatcagtgttatttgcctgaaaaaagtatattatgttcaaact 544

                             
Query: 486 ttaaaggcaatttttttc 503
           |||| |||||||||||||
Sbjct: 543 ttaatggcaatttttttc 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no378_k24.g1 MSMg01no378_k24.g1 CHROMAT_FILE:
MSMg01no378_k24.g1 PHD_FILE: MSMg01no378_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:14 2005
         (463 letters)



>mm_chr15_93506205_93507067
          Length = 863

 Score =  872 bits (451), Expect = 0.0
 Identities = 460/463 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atactctgtccgtcattcataatatgacacgctctaggcctgacccatctctcgggatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atactctgtccgtcattcataatatgacacgctctaggcctgacccatctctcgggatcc 260

                                                                       
Query: 61  cccagcgccaatgttctgcgtccaggagaagtcatgggatttgaagcagacactctagcc 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccagtgccaatgttctgcgtccaggagaagtcatgggatttgaagcagacactctagcc 320

                                                                       
Query: 121 cctatctacttactggcttaggagccttgtgcaaggtgcatttagagaatggagataatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctatctacttactggcttaggagccttgtgcaaggtgcatttagagaatggagataatt 380

                                                                       
Query: 181 aataatcatagcgtccctactgtgtagggttgatgtgagaacaaattagagaaaaatgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataatcatagcgtccctactgtgtagggttgatgtgagaacaaattagagaaaaatgtg 440

                                                                       
Query: 241 tcaattagggcactctgaatacttacacaaatgttcacagtgcgtcatcaccatgccatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaattagggcactctgaatacttacacaaatgttcacagtgcgtcatcaccatgccatc 500

                                                                       
Query: 301 ctctgcctgtgagttctgccgacatttaccctacaacaactattcgctgagcattgacta 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 ctctgcctgtgagttctgccgacatttaccctacaacgactattcgctgagcattgacta 560

                                                                       
Query: 361 gtcctggggatactagtagctctcacggggggcccctgctctcacagggatcatcatctg 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcctggggatactagtagctctcaaggggggcccctgctctcacagggatcatcatctg 620

                                                      
Query: 421 tgggagaagcagacacatgtgtagcaggctatggggtgttcca 463
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgggagaagcagacacatgtgtagcaggctatggggtgttcca 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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