BAC Information

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BAC

Clone NameMSMg01-380N18
Chromosome15 (Build37)
Map Location 34,322,675 - 34,323,062
singlet/doubletsinglet
Overlap geneMatn2
Upstream genePgcp, 1700084J12Rik, Tspyl5, LOC675463, Mtdh, Laptm4b
Downstream geneRpl30, BC030476, Hrsp12, Pop1, Npal2, Kcns2, Stk3, Osr2, Vps13b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380N18.T7 (MSMg01no380_n18.b1)MSMg01-380N18.TJ (MSMg01no380_n18.g1)
ACCAG485136AG485137
length756753
length of high quality
(start - end)
476 (42 - 517)386 (152 - 537)
definitionCHROMAT_FILE: MSMg01no380_n18.b1 PHD_FILE: MSMg01no380_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:03 2005CHROMAT_FILE: MSMg01no380_n18.g1 PHD_FILE: MSMg01no380_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:03 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTCTGTACCATGGAGATTCTCCACAGATACTTAAAAGTTACACTCATAC
AAGAATTTATCGAGGCCTAGGAAATAGGAGGTTTGCATTATTCATGAGAA
GGTCTGCTAGAGCAGAACCCCCTGGTGCTAGGTTTCACAAGGCTCAAAGG
AGTAGCACAAATTGTGACTAGGGTGTGAAATCCTTACCTGTCTTTAGCTG
ACCCTAGGCAGGGAGGTTTTAACTTTACTGTAAATATTACCTGGTTCCTG
TAAGTCCTTTTGAAGTCATTCCTTTGTTTTGTGCCAGGTAATTTCAATGT
ACTTTGCCTGCTGTGACATCCTACCCCCTTTATTTTCTGTATTATATAAG
ACTGGTGTTCACTTTGTGAAAATACATTCAGACTCTACACAACCTCTTGT
GTTGCGTCTGTCTGTCATTCGCTGACTCCTTGTCCATCTGCAACCAGAGA
TCTGTTCTATGCAGACAGGGACCAAAGAGAGTCTGCAGCAGGTAGAGTCT
TCTGACCTTGATGGTTCTATTTGCTCATCTCCAAGACTCTGCTTCCTGGA
AAAAGGCCCTTGAGACGTTCCCGAGACACACCCTATAAATCACCTTACAG
CTGGGTCCAGGGACCAATAAATGGGCTTGTCGGGGGAATGGGCCTACCCC
TCTTTTATTAATACGGTACTCTCCGGTAAACTTCCTAAGAGTTTTACCAC
AAAGGG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGAGAAATCCTGTCTCTGAAAAACAAA
AAACAAAAACTAAAACTAANAAAAAAAAAAAAAAAAAAAAAGTGGTGGGN
GAAGCAATGAATAAGCAAACAACAAAATTGCCTAAGAAAGACCTGAACAG
ACCACAGAAATAGATGTGAGAATCTCGTGATGTCTCATCCATAGACAAAG
AACTACAGGCAACTCACGGATGCCCAGGGTGGGAGAACAGATCTTCCCCA
GCGAAGAGCCCTTGGTTATCTAATATTAAATGGTCAGCCCTGAAATCATC
TACATACTAGCCATACTAAACAAAGTCAGCAAGATGTGTGGGAGAGATAA
CCCATTTGGAATGAACAATGGGGATTGTTTGATTGCAGAGGTGCCGATGT
GACAAGGGAACTTTCCCTAGGCAGGTGCCGTGTCCTGATATGGTCTAAAG
GGTTAAAGCTGGGCCTCCCTGGGATCATCTGCATGCAGTGTCCTTCTCAG
ACTCATCATATCTGGATATGAATCTGACACCTTCATAAAAAAGGGGGCTA
GCATTATAGTATAACCCGTAAAAAGTGGTTAGCTCAACCAGAGGGTCCTA
CCCCCTATGTGGGTGGCTATGAAAAATTCATAAATTGTGCAAACCTTTTG
GGGGTCGAGGTTTTTCATATCTATTTCCACTACCCGTCCCCTTTACCCGA
TCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_n18.g1 MSMg01no380_n18.g1 CHROMAT_FILE:
MSMg01no380_n18.g1 PHD_FILE: MSMg01no380_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:03 2005
         (386 letters)



>mm_chr15_34322477_34323262
          Length = 786

 Score =  644 bits (333), Expect = 0.0
 Identities = 374/389 (96%), Gaps = 4/389 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagcaatgaataagca---aacaacaaaattgcctaagaaagacctgaacagaccacaga 57
           ||||||||||||||||   |||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 199 aagcaatgaataagcaaacaacaacaaaactgcctaagaaagacctgaacagaccacagc 258

                                                                       
Query: 58  aatagatgtgagaatctcgtgatgtctcatccatagacaaagaactacaggcaactcacg 117
           ||| ||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 259 aattgatgtgagaatcttgtgctgtcccatccatagacaaagaactacaggcaactcacg 318

                                                                       
Query: 118 gatgcccagggtgggagaacagatcttccccagcgaagagcccttggttatctaatatta 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gatgcccagggtgggagaacagatcttccccagcgaagagcccttggttatctaatatta 378

                                                                       
Query: 178 aatggtcagccctgaaatcatctacatactagccatactaaacaaagtcagcaagatgtg 237
           |||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||
Sbjct: 379 aatggtcagccctgaaatcatccacatactagccacactaaacaaag-cagcaagatgtg 437

                                                                       
Query: 238 tgggagagataacccatttggaatgaacaatggggattgtttgattgcagaggtgccgat 297
           ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgggaaatataacccatttggaatgaacaatggggattgtttgattgcagaggtgccgat 497

                                                                       
Query: 298 gtgacaagggaactttccctaggcaggtgccgtgtcctgatatggtctaaagggttaaag 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gtgacaagggaactttccctaggcaggtgccgtgtcctgatatggtctaaagggttaaag 557

                                        
Query: 358 ctgggcctccctgggatcatctgcatgca 386
           |||||| ||||||||||||||||||||||
Sbjct: 558 ctgggcatccctgggatcatctgcatgca 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)