BAC Information

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BAC

Clone NameMSMg01-382B16
Chromosome15 (Build37)
Map Location 32,171,229 - 32,171,660
singlet/doubletsinglet
Overlap gene0610007N19Rik
Upstream geneDap, EG625796, 5730557B15Rik, Ropn1l, LOC622810, March6, Cmbl, Cct5, A930016P21Rik, LOC667231, Tas2r119
Downstream geneSema5a, LOC100040962, Sdc2, Pgcp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382B16.T7 (MSMg01no382_b16.b1)MSMg01-382B16.TJ (MSMg01no382_b16.g1)
ACCAG486087AG486088
length780768
length of high quality
(start - end)
283 (32 - 314)445 (59 - 503)
definitionCHROMAT_FILE: MSMg01no382_b16.b1 PHD_FILE: MSMg01no382_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:44 2005CHROMAT_FILE: MSMg01no382_b16.g1 PHD_FILE: MSMg01no382_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTTCAT
TTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCT
TCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGA
TAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTGGTCTTATTGAC
GGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGT
CAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTT
TCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAG
TTTCAGTGTCTCTGGGTTTAAGGGAAGTTCTTTGATCCACTTAGATTTGA
CCTTAGTACCAGGAGATAAATATGGATTGATTCCGATTCTTCCACTGTGA
TAACACCATTTTGGGCCGCCCCAATTGGTGAAAAGGGGGCTTTTCTTCCC
CTGGAGGGTTTTAGCCCCCTGGCCCAAAACAAGGGACCATAAGGGGGGGG
TGTTTTTTTTGGGGTTTTAATTTCATTTAATGGGGGCTTTTTGGGGGGCC
CATATAATATACTCGGGTTTTTCTCCCTCACTTTTGTTATGAAAATTTCT
ATTTCATCGGGCTTTGTCCTCCCCCTATTTTTTTTTTTTTTCTCTGACTC
CTTTCTTTCTTCTTGTTTCTCTCCGCTTTTCTTTTTGTGTTTTTTCTTAC
TACTCCTTTCTCTTGTTCTTGATGTCGTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTGGGGCGCTGATTCATGTGACTTGAAAAAACGCCATCCATTT
CCTGACTCACCGCAGATTTGGTTCAGAAATATGAAGCAGTGCAGGACTTT
GAACTAACACAACAATTTTGTCTTTTCTTTATATTCCCTCCCAGTACCTG
ACTAAAGTCCAGAGAATGGAGCAGGGAGGAACTGAAGAGAGCGTGGCTGG
GAGACATGAAGACAGAGCTGTGGACCACAGTTGGCTTTCCTGGGAACACT
CCCTAACTGTGGTCTATAAGATGTAACAAGACTATTACTCAATTATTACA
AAGAAGAAGAAAAAAAAAAAAACCAGTGCTGGCCTCTTTACATTGTGTTT
TCCTGTAGATGAGCCTGGCATATGTTACAGTAACCATTCCATAGTTTATT
TTCCCCTCTGGTTCCCACGATTGTCTGACCCTGCCCATTTTACCACACCT
ATACACTGGCACAGAGAAAAGGAAGTTTGATGTCTCTGTAGCATTGCTCG
GTGCTGCTTCGGTTTTATGTACTCGGAGCACTCCAAAAAACCACGTTGGT
GGTACGGGGTAAAAATGAGGGCTAAATGGGAGTGGGTCAAAAAGACGGTT
TTTAATTTAAGGTTTGCTAAATTGTCGAAATTTATAGCTCCTCTGTGTTT
CCCGATTTCTCAAAACCCTTCTTATTGTTCATTGCCCCCCCCCTATTCCT
TCTAAAATATTTAACGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_b16.g1 MSMg01no382_b16.g1 CHROMAT_FILE:
MSMg01no382_b16.g1 PHD_FILE: MSMg01no382_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:44 2005
         (445 letters)



>mm_chr15_32171029_32171867
          Length = 839

 Score =  797 bits (412), Expect = 0.0
 Identities = 429/438 (97%), Gaps = 6/438 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggggcgctgattcatgtgacttgaaaaaacgccatccatttcctgactcaccgcagatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tggggcgctgattcatgtgacttgaaaaaacgccatccatttcctgactcaccgcagatt 573

                                                                       
Query: 61  tggttcagaaatatgaagcagtgcaggactttgaactaacacaacaattttgtcttttct 120
            ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 572 cggttcagaaatatgaagcagtgcaggactttcaactaacacaacaattttgtcttttct 513

                                                                       
Query: 121 ttatattccctcccagtacctgactaaagtccagagaatggagcagggaggaactgaaga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 512 ttatattccctcccagtacctgactaaagtccagagaatggagcagggaggagctgaaga 453

                                                                       
Query: 181 gagcgtggctgggagacatgaagacagagctgtggaccacagttggctttcctgggaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gagcgtggctgggagacatgaagacagagctgtggaccacagttggctttcctgggaaca 393

                                                                       
Query: 241 ctccctaactgtggtctataagatgtaacaagactattactcaattattacaaagaagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctccctaactgtggtctataagatgtaacaagactattactcaattattacaaagaagaa 333

                                                                       
Query: 301 gaaaaaaaaaaaaaccagtgctggcctctttacattgtgttttcctgtagatgagcctgg 360
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ------aaaaaaaaccagtgctggcctctttacattgtgttttcctgtagatgagcctgg 279

                                                                       
Query: 361 catatgttacagtaaccattccatagtttattttcccctctggttcccacgattgtctga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 catatgttacagtaaccattccatagtttattttcccctctggttcccacgattgtctga 219

                             
Query: 421 ccctgcccattttaccac 438
           ||||||||||||||||||
Sbjct: 218 ccctgcccattttaccac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 839
Length adjustment: 10
Effective length of query: 435
Effective length of database: 829
Effective search space:   360615
Effective search space used:   360615
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)