Query= MSMg01no383_c10.b1 MSMg01no383_c10.b1 CHROMAT_FILE:
MSMg01no383_c10.b1 PHD_FILE: MSMg01no383_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:07 2005
(532 letters)
>mm_chr15_93392265_93393194
Length = 930
Score = 994 bits (514), Expect = 0.0
Identities = 524/528 (99%), Gaps = 2/528 (0%)
Strand = Plus / Minus
Query: 5 gaattcttccaactcgctggcttcaaccaaataacactgcattcatcttgacacagtcat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gaattcttccaactcgctggcttcaaccaaataacactgcattcatcttgacacagtcat 671
Query: 65 acttaacaaagtgcgcatgtcctctacatacatacgtgataaaaagcgagcgtgtgctag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 acttaacaaagtgcgcatgtcctctacatacatacgtgataaaaagcgagcgtgtgctag 611
Query: 125 gtgtgtgacctacgttgcctacggagaagacaccaagttaaacactttgactcatttgcg 184
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 610 gtgtgtgacctacgttgcctacggagaagacaccaagttaaacac--tgactcatttgca 553
Query: 185 acatctggggcatagagacaggagagagtgttagcactcaggactgtgtgaactgagctt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 acatctggggcatagagacaggagagagtgttagcactcaggactgtgtgaactgagctt 493
Query: 245 ggagatagtcccttgcacttacactagaagatgtgaatactttatcggttgtcagcacgg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ggagatagtcccttgcacttacactagaagatgtgaatactttatcggttgtcagcacgg 433
Query: 305 tggccccaaagcagaggaggagtgtcaaggactgctccagaaattagactttgccaaacg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tggccccaaagcagaggaggagtgtcaaggactgctccagaaattagactttgccaaacg 373
Query: 365 cgcatctcaaggcagagtaatagcagctcagaaaggctggagggttggggccgggtaata 424
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 372 cgcatctcaaggcagagtaatagcagctcagaaaggctggaggtttggggccgggtaata 313
Query: 425 atgccctttggtgctaggggaaaggcgtttcagattttatctgccagggatgttctttgt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 atgccctttggtgctaggggaaaggcgtttcagattttatctgccagggatgttctttgt 253
Query: 485 ggtagtagtctgcaggatggcgagattagaggaggtgagagcagactg 532
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggtagtagtctgcaggatggcgagattagaggaggtgagagcagactg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 930
Length adjustment: 10
Effective length of query: 522
Effective length of database: 920
Effective search space: 480240
Effective search space used: 480240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no383_c10.g1 MSMg01no383_c10.g1 CHROMAT_FILE:
MSMg01no383_c10.g1 PHD_FILE: MSMg01no383_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:07 2005
(529 letters)
>mm_chr15_93243715_93244649
Length = 935
Score = 814 bits (421), Expect = 0.0
Identities = 509/551 (92%), Gaps = 22/551 (3%)
Strand = Plus / Plus
Query: 1 caacttacagtctattaaaattcagccctaaaatgacaaagccttcttaaagccttattt 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 185 caacttacagtctattaaaattcagccctaaaatgacaaagccttcttcaagccttattt 244
Query: 61 ttaaaatcccctattcttgctcagattaagaattgccaaaataggtcgggcatggtgggg 120
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 245 ttaaaatcccccattcttgctcagattaagaattgccaaaataggtcgggcgtggtggca 304
Query: 121 cacgcctttaatcccagcacttgggaggcagaggcaggcggatttctgagttcgaggcta 180
||||| ||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |
Sbjct: 305 cacgctttttatcccagcactcgggaggcagaggcaggcagatttctgagttcgaggcca 364
Query: 181 gcctggtctacagagtgagttctaggacagccagggctacacagagaaaccctgtctcga 240
|||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||
Sbjct: 365 gcctggtctacagagtgagttccaggacagtcagggttacacagagaaaccctgtctcga 424
Query: 241 aaaaccaaaaaaaaa----------------gaattgccaaaataaccttctgaactaag 284
||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 425 aaaaccaaaaaaaaaaaaaaaaaaaaaaaaagaattgccaaaataaccttctgaactaag 484
Query: 285 ttgcgttgtgctgagaacacctaagcactaaactctcttgagagacttctgttgctaaga 344
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 485 ttgcgttgtgctgagaacacctaagcactaaactctcttgagagacttctgctgctaaga 544
Query: 345 ag-actgcagcttctggag-----tcaggggtgcagacccttccatagttcccagaccgt 398
|| |||||||||||||||| |||||||||||| |||||||| ||| ||||||||||
Sbjct: 545 aggactgcagcttctggagccaggtcaggggtgcaggcccttccagagtccccagaccgt 604
Query: 399 gtgacacagcacagcctctttaatgacacgttgccatgtaacgcacctgtaacttatcag 458
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 605 gtgacacagcacagcctccttaatgacacgttgccacgtaacgcacctgtaacttatcag 664
Query: 459 cccatgttcattacgtaactttgtactgtacgtcacagtgatgagtgtgacagctcagct 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cccatgttcattacgtaactttgtactgtacgtcacagtgatgagtgtgacagctcagct 724
Query: 519 ctttgatttca 529
||| |||||||
Sbjct: 725 cttcgatttca 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 935
Length adjustment: 10
Effective length of query: 519
Effective length of database: 925
Effective search space: 480075
Effective search space used: 480075
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
