BAC Information

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BAC

Clone NameMSMg01-383F12
Chromosome15 (Build37)
Map Location 11,758,218 - 11,949,247
singlet/doubletdoublet
Overlap geneNpr3, LOC381002, Sub1
Upstream geneC1qtnf3, Amacr, Slc45a2, Rxfp3, Adamts12, Tars, LOC100039772
Downstream geneLOC100040027, Zfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3, Pdzd2, LOC100040109, 6030458C11Rik, Rnasen
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383F12.T7 (MSMg01no383_f12.b1)MSMg01-383F12.TJ (MSMg01no383_f12.g1)
ACCAG487035AG487036
length773758
length of high quality
(start - end)		545 (37 - 581)510 (68 - 577)
definitionCHROMAT_FILE: MSMg01no383_f12.b1 PHD_FILE: MSMg01no383_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:23 2005CHROMAT_FILE: MSMg01no383_f12.g1 PHD_FILE: MSMg01no383_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,758,218 - 11,758,759)(11,948,738 - 11,949,247)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAA
ATGTGAATATATCATGGTCATGGGTTCAACTTCCTCAGTAGGGTACACAA
TTTTGAAACTGATTCCCCTCTTCACATGACCAAAATGTATCACAGCCCCA
TTCTAATTTGTTTTCAGAAGAGAACAAGCTTCAAGACCAGAATCTTGTTT
GACTGAAATATCTCCTTATTTTAGTCAAGCATGCATGGCACATTGTGATG
CCTTTGAGCTATCTCCAAATAAAGTAAAATATGCACCAACCTTGAGACGT
GTTCTGCACTCACCCTGTATGTTCTGTGTTGATCAGCAGTTAATGGGGAA
AGAAAGGGGAATATTAAACATCCAATTTTCTTCTTCTAGAGCTGCACAGA
GAAGGGGCACACTGAGCTGAATGGAAATATAAAACAACCAAAGGTATGTC
CCTCTCTCCTTCCTGAGGAATTTCATGATGCTGACAGGAACATAAAGTTG
CCAAACTAAACATACCACATTCTGATTTGATGCCAACTGAAAATAAAATC
AGATAAATATGAAAATTATTAGAGATGAAAATGTCTGTGGTCATTTCTTA
AAGATGCTCAAAATGGCTTTTGTGAGCTCTAGATGAAGCTAGACCCTTCA
TCTTGTGAAGAGATGAAAATTTAAGATTAGGAAGGAGGAGATGGGTGTAC
GTCTAGTCTAACCTAAGGGGAAAAAAAAAAGGGGCTAAAAATCCAACACG
GACCTTGAGAATAAAGGGACCCN

GTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACCATCATGGAATCATTCCTCCATTAGATCTGA
AGTCACTCGATGCAGGGGTGCAGTCTGTAGTTTCTTCGTATATTGTGTAC
ACAATACCGAAATGCTGTCAGTTTGGTTATGGGTGGAACCGCCTGCAATC
AATCAGAGCCTACAGTGCAGTGGGGTAATGGGATGAAAACTCACTAAAGC
TGGCACGAAACATACAACTTTGGCTCACGGGTCCAGCCTTGCCATTTTAT
GTAGAGAAACGGGTAGGGTGCTTAAGATTTGTTAGTGGCAAATATAATGT
CTGGCTCCCTGCTAGCCATCTTTCTGTTATGCTTGCTTATCTTGGCTGTT
GGACCCCAACCCGTGACCTCTCCAGAAGGGCTCCAAGCCCTCACATTAAT
GCATGCAGTAACTCTGGTGTGGGTCTACTTGGAGGATCCACTCTTTGCCA
TGAAGTAGCAGCGAGGTGATCAACAAGACACTAAGTAGGAGGGGCTCATG
CTAACATTGGGATTATTTGAGGAGGGGGCCCGGGATTCCAGTGCATTTGT
AGTCTGCACAAGATGGAGTAACTAGGCACACAGAGGCTGACACTGCTGAC
TCCCTATGGTGTTCAGTTCAGATTTCTGCNAGGTACTCCGTAAGGTGGTT
TGTCTGTTCGTCCCCCCTCATAGCTAACCTTGTTTTCTTAAACTCCGTTG
TTGACAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_f12.b1 MSMg01no383_f12.b1 CHROMAT_FILE:
MSMg01no383_f12.b1 PHD_FILE: MSMg01no383_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:23 2005
         (545 letters)



>mm_chr15_11758015_11758959
          Length = 945

 Score = 1025 bits (530), Expect = 0.0
 Identities = 539/542 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcaaatgtgaatatatcatggtcatgggttcaacttcctcagtagggtacaca 63
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 204 ggaattctcaaatgtgaatatatcatggtcatgggttcaacttcttcagtagggtacaca 263

                                                                       
Query: 64  attttgaaactgattcccctcttcacatgaccaaaatgtatcacagccccattctaattt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 attttgaaactgattcccctcttcacatgaccaaaatgtatcacagccccattctaattt 323

                                                                       
Query: 124 gttttcagaagagaacaagcttcaagaccagaatcttgtttgactgaaatatctccttat 183
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 324 gttttcagaagagaacaagcttcaagatcagaatcttgtttgactgaaatatctccttgt 383

                                                                       
Query: 184 tttagtcaagcatgcatggcacattgtgatgcctttgagctatctccaaataaagtaaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttagtcaagcatgcatggcacattgtgatgcctttgagctatctccaaataaagtaaaa 443

                                                                       
Query: 244 tatgcaccaaccttgagacgtgttctgcactcaccctgtatgttctgtgttgatcagcag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tatgcaccaaccttgagacgtgttctgcactcaccctgtatgttctgtgttgatcagcag 503

                                                                       
Query: 304 ttaatggggaaagaaaggggaatattaaacatccaattttcttcttctagagctgcacag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttaatggggaaagaaaggggaatattaaacatccaattttcttcttctagagctgcacag 563

                                                                       
Query: 364 agaaggggcacactgagctgaatggaaatataaaacaaccaaaggtatgtccctctctcc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agaaggggcacactgagctgaatggaaatataaaacaaccaaaggtatgtccctctctcc 623

                                                                       
Query: 424 ttcctgaggaatttcatgatgctgacaggaacataaagttgccaaactaaacataccaca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttcctgaggaatttcatgatgctgacaggaacataaagttgccaaactaaacataccaca 683

                                                                       
Query: 484 ttctgatttgatgccaactgaaaataaaatcagataaatatgaaaattattagagatgaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttctgatttgatgccaactgaaaataaaatcagataaatatgaaaattattagagatgaa 743

             
Query: 544 aa 545
           ||
Sbjct: 744 aa 745


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no383_f12.g1 MSMg01no383_f12.g1 CHROMAT_FILE:
MSMg01no383_f12.g1 PHD_FILE: MSMg01no383_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:23 2005
         (510 letters)



>mm_chr15_11948538_11949447
          Length = 910

 Score =  971 bits (502), Expect = 0.0
 Identities = 508/510 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accatcatggaatcattcctccattagatctgaagtcactcgatgcaggggtgcagtctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 accatcatggaatcattcctccattagatctgaagtcactcgatgcaggggtgcagtctg 651

                                                                       
Query: 61  tagtttcttcgtatattgtgtacacaataccgaaatgctgtcagtttggttatgggtgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tagtttcttcgtatattgtgtacacaataccgaaatgctgtcagtttggttatgggtgga 591

                                                                       
Query: 121 accgcctgcaatcaatcagagcctacagtgcagtggggtaatgggatgaaaactcactaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 accgcctgcaatcaatcagagcctacagtgcagtggggtaatgggatgaaaactcactaa 531

                                                                       
Query: 181 agctggcacgaaacatacaactttggctcacgggtccagccttgccattttatgtagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 agctggcacgaaacatacaactttggctcacgggtccagccttgccattttatgtagaga 471

                                                                       
Query: 241 aacgggtagggtgcttaagatttgttagtggcaaatataatgtctggctccctgctagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aacgggtagggtgcttaagatttgttagtggcaaatataatgtctggctccctgctagcc 411

                                                                       
Query: 301 atctttctgttatgcttgcttatcttggctgttggaccccaacccgtgacctctccagaa 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 410 atctttctgttatgcttgcttatcttggctgttggaccccaacctgtgacctctccagaa 351

                                                                       
Query: 361 gggctccaagccctcacattaatgcatgcagtaactctggtgtgggtctacttggaggat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gggctccaagccctcacattaatgcatgcagtaactctggtgtgggtctacttggaggat 291

                                                                       
Query: 421 ccactctttgccatgaagtagcagcgaggtgatcaacaagacactaagtaggaggggctc 480
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 290 ccactctttgccatgaagtagcagcgaggtgatcaacaagacaccaagtaggaggggctc 231

                                         
Query: 481 atgctaacattgggattatttgaggagggg 510
           ||||||||||||||||||||||||||||||
Sbjct: 230 atgctaacattgggattatttgaggagggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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