Query= MSMg01no384_d04.b1 MSMg01no384_d04.b1 CHROMAT_FILE:
MSMg01no384_d04.b1 PHD_FILE: MSMg01no384_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:26 2005
(552 letters)
>mm_chr15_50576360_50577311
Length = 952
Score = 967 bits (500), Expect = 0.0
Identities = 532/548 (97%), Gaps = 10/548 (1%)
Strand = Plus / Plus
Query: 5 gaattcttacctggggctagtcataaaagacaggaaacccatgtgtgctgaaatggtttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttacctggggctagtcataaaagacaggaaacccatgtgtgctgaaatggtttt 264
Query: 65 aatgtgcgaggcaagcactcacagccgtttttctaacacatcacccaagtaacaccttaa 124
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 265 aatgtgcgaggcaagcactcacagccgtttttctagcacgtcacccaagtaacacct--- 321
Query: 125 taataataatagtgtcctacctattatatctgttgtgtgagattgtgtcactttacggtc 184
||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ------taacagtgtcctacttattatatctgttgtgtgagattgtgtcactttacggtc 375
Query: 185 tggattttaaaactccatttttatcaatattattgcattccccttatattttcttcaagc 244
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tgga-tttaaaactccttttttatcaatattattgcattccccttatattttcttcaagc 434
Query: 245 ctttatgtttttcaaataaataatccgcacacctctgagaggtatgcatttggttccaaa 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ctttatgtttttcaaataaataatccgcacacctctgagaggtatgcatttggttccaat 494
Query: 305 gtctttagtcaaaattcttgtaaattgatcatgtgaggcatctggcagggactcatgacc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gtctttagtcaaaattcttgtaaattgatcatgtgaggcatctggcagggactcatgacc 554
Query: 365 ttttgtttaccagagttagggtttaagccttctggggacaatctaggattgagaaaaaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ttttgtttaccagagttagggtttaagccttctggggacaatctaggattgagaaaaaga 614
Query: 425 agacttacagaaggaatgcttgtttagacttaaaagcttcccgattaaaaatctgaaatg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 agacttacagaaggaatgcttgtttagacttaaaagcttcccgattaaaaatctgaaatg 674
Query: 485 tgtgtttactctttgaaaaactacttcccttgaaaagttctgtttctcaactcaggaagt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tgtgtttactctttgaaaaactacttcccttgaaaagttctgtttctcaactcaggaagt 734
Query: 545 tgtctaag 552
||||||||
Sbjct: 735 tgtctaag 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_d04.g1 MSMg01no384_d04.g1 CHROMAT_FILE:
MSMg01no384_d04.g1 PHD_FILE: MSMg01no384_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:26 2005
(457 letters)
>mm_chr15_50724038_50724898
Length = 861
Score = 868 bits (449), Expect = 0.0
Identities = 457/461 (99%), Gaps = 4/461 (0%)
Strand = Plus / Minus
Query: 1 ttccttattttctgagatgtcctacaaaagcccaggttgtggggttg--ttttttttttt 58
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 661 ttccttattttctgagatgtcctacaaaagcccaggttgtggggttgttttttttttttt 602
Query: 59 gttt--tttttaatgtccagcctccatttttcagaaagttattgctttaaaagtgtgagg 116
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gttttgtttttaatgtccagcctccatttttcagaaagttattgctttaaaagtgtgagg 542
Query: 117 atggtttgaagagctttacatatgtttgacagcagaagataataaatgtaaacaaatctt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atggtttgaagagctttacatatgtttgacagcagaagataataaatgtaaacaaatctt 482
Query: 177 taatatttcctctaattcagtttgtgccatgcaaatgtcagttctagaaaaacaaatcaa 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 taatatttcctctaattcagtttgtgccatgcaaatgtcagttctagaaaaacaaatcaa 422
Query: 237 taaacatttgaaggaaaacaacgagcataacttagtttatatattaaaaacaactgttaa 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 taaacatttgaaggaaaacaacgagcataacttagtttatatattaaaaacaactgttaa 362
Query: 297 acaattatgacctcatgtattggttggttgttttgaaatattcctactagagttaaaaaa 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acaattatgacctcatgtattggttggttgttttgaaatattcctactagagttaaaaaa 302
Query: 357 tgctacgagggcctttgagcttaaacatattgtgtcaatcaagagcatatgtgatttatc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgctacgagggcctttgagcttaaacatattgtgtcaatcaagagcatatgtgatttatc 242
Query: 417 taaagcatgaggtaaaaattttcttcataaattattgcatc 457
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taaagcatgaggtaaaaattttcttcataaattattgcatc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 861
Length adjustment: 10
Effective length of query: 447
Effective length of database: 851
Effective search space: 380397
Effective search space used: 380397
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
