Query= MSMg01no384_o02.b1 MSMg01no384_o02.b1 CHROMAT_FILE:
MSMg01no384_o02.b1 PHD_FILE: MSMg01no384_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:17 2005
(534 letters)
>mm_chr15_101010939_101011871
Length = 933
Score = 942 bits (487), Expect = 0.0
Identities = 520/531 (97%), Gaps = 1/531 (0%)
Strand = Plus / Minus
Query: 4 ggaattccaactttcacaagcaaagtcactttgcctgtaaactgctgaagggcaaggata 63
||||||||||| || |||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 733 ggaattccaacaggcagaagcaaagtcactttgcccgtaaactgctgaagggcaagggtg 674
Query: 64 tccctcttgcttcttcttggggccaggcatgcctggaccattagaaacaaactgatttaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tccctcttgcttcttcttggggccaggcatgcctggaccattagaaacaaactgatttaa 614
Query: 124 tcttatgtctctgagtgttaagtgcaatatacaaacacatatcaagataatgcctgagga 183
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 613 tcttatgtctc-gagtgttaagtgcaacatacaaacacatatcaagataatgcctgagga 555
Query: 184 cttggggtgaaggggctcctccacaaattcttaagacactcctcagctcaattcaacccc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 cttggggtgaaggggctcctccacaaattcttaagacactcctcagctcaattcaacccc 495
Query: 244 agctaatctggaaagtacacaaatcctgtttcctccatttaacttccaaccttgaactcc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 agctaatctggaaagtacacaaatcctgtttcctccatttaacttccaaccttgaactcc 435
Query: 304 agatgatcctccagcctcagcctcagctacgaggaaaggttcatgccccacgccaccaca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agatgatcctccagcctcagcctcagctacgaggaaaggttcatgccccacgccaccaca 375
Query: 364 cctcggaaaagactttcctatgtaagtcctagtgacaggatgctgagctcctggccacat 423
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 374 cctcggaaaagactttcctatgtatgtcctagtgacaggatgctgagctcctggccacat 315
Query: 424 cctgggctgtttctctgcattctcccatcgttccgctgtgcccacggttgtctgatcacc 483
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 314 cctgggctgtttctctgcattctcccatcgttccgctgtgcccacggctgtctgatcacc 255
Query: 484 acacgcgcacaaacactttactctttactcagtctctacaggtctcaagtc 534
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 acacgcgcacaaacactttactctttactcagtctctacaggtctcaagtc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 933
Length adjustment: 10
Effective length of query: 524
Effective length of database: 923
Effective search space: 483652
Effective search space used: 483652
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_o02.g1 MSMg01no384_o02.g1 CHROMAT_FILE:
MSMg01no384_o02.g1 PHD_FILE: MSMg01no384_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:17 2005
(535 letters)
>mm_chr15_100784412_100785345
Length = 934
Score = 1004 bits (519), Expect = 0.0
Identities = 531/535 (99%), Gaps = 1/535 (0%)
Strand = Plus / Plus
Query: 1 attagtgaagccatctggtccccgggcttttctttgtgggggttcattttttttttaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 attagtgaagccatctggtccccgggcttttctttgtgggggttcattttttttt-aatg 259
Query: 61 cacggtacagcggtgtatttatagtagtctcacttgagggaaagactgcttaaggatgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cacggtacagcggtgtatttatagtagtctcacttgagggaaagactgcttaaggatgga 319
Query: 121 tctgtatgctaagacttataaagaaaaaattctggaaggatattaaaaaaataaacagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tctgtatgctaagacttataaagaaaaaattctggaaggatattaaaaaaataaacagca 379
Query: 181 gccaagattaccattggataatagagcagaacaatctagcgttttaaaattctaggtgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gccaagattaccattggataatagagcagaacaatctagcgttttaaaattctaggtgtg 439
Query: 241 caccattctaaataaaaagctttacttaaaagtgactggcacttggttttgcaagggagg 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 440 caccattctaaataaaaagttttacttaaaagtgactggcacttggttttgcaagagagg 499
Query: 301 gcctaaccctccagggacccccagttccataggccctgtgtgtgtgtcttcagagccctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gcctaaccctccagggacccccagttccataggccctgtgtgtgtgtcttcagagccctc 559
Query: 361 tgttctccatcctcacaggattgcttgtcaacatcctaaaggcctggctctctctccttt 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgtcctccatcctcacaggattgcttgtcaacatcctaaaggcctggctctctctccttt 619
Query: 421 gtcattactcacagacagcctgggggtggggtcctctgtcctgcaacctctcagattttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtcattactcacagacagcctgggggtggggtcctctgtcctgcaacctctcagattttg 679
Query: 481 aacttgtacttacccactgtcatgacttcgagtttacttccttcctcccataaag 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aacttgtacttacccactgtcatgacttcgagtttacttccttcctcccataaag 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 934
Length adjustment: 10
Effective length of query: 525
Effective length of database: 924
Effective search space: 485100
Effective search space used: 485100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
