BAC Information

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BAC

Clone NameMSMg01-385D23
Chromosome15 (Build37)
Map Location 95,057,936 - 95,058,419
singlet/doubletsinglet
Overlap geneNell2
Upstream geneD630010B17Rik, Adamts20, Pus7l, Irak4, Twf1, Tmem117, LOC100043315
Downstream geneDbx2, LOC100042684, LOC667849, EG629300, LOC667864, Tmem16f, LOC100043329, D030018L15Rik, LOC100043335, EG667869, LOC667874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385D23.T7 (MSMg01no385_d23.b1)MSMg01-385D23.TJ (MSMg01no385_d23.g1)
ACCAG488492AG488493
length748763
length of high quality
(start - end)
507 (38 - 544)487 (64 - 550)
definitionCHROMAT_FILE: MSMg01no385_d23.b1 PHD_FILE: MSMg01no385_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:46 2005CHROMAT_FILE: MSMg01no385_d23.g1 PHD_FILE: MSMg01no385_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCT
GGACTGTATCTTGGATATTCTGTACGTGTGTGTGTATGTGTGTGTGTGCA
TGTGTGTGGCTAATATCCACTTATTAGTGAGTCCATACCATGCATGTCCT
TTTAAGTCTGAATGATATTTTCCCGTTCTACCCATTTGCCTGCAAAACTC
GGGATGTCCTCATTCTTAATAGCTGAGTAGTATTCCATTGGGTAAATGAA
CCACATTTTCTGTATCCATTCTTCTTCTGTCGTGGGACATCTGGGTTGTT
TCCAGCTTCTGGCTATCACAAATATGGCCTATATGAACATAGTGGAAAAA
TGTGTCCCTGTGGCATAGTGTGGCATCTTTTGGGTATATTTCCAAGAGTT
GTACTGCTGGGTCTTCAGGTAGATCTATTTTCAGTTTTCTGAGGAACCTC
CAGATTGATTTCCAGAGTGGTTGTACCAGTTTGCAATCCCACCAGCAATG
GAGGAGTGTTCCTCTTTCTCCACGTCCTCGCCACCATGTGTTGTCACCTG
GAGTTCTGATCTTAGCCATCCTGATTGGTGTGAGGTAGAATCTCAGCGTC
GTCTTCATTTTCATTTCTCTGATCACTAAGGACTTTGAACATTACTTTGG
GTACTTCTCACCTAATTGAAATTTCTCTGTTGGAATTCTCGGGTTAATCA
AAAACCAATTTTTTCCATCTGTATATGGAAATTTCCTTATTACCTTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAGTCCTCTGGAAGACACTCTTACCAGGAGTCAGGGTA
CAACGCTGTCTATACAGCACTGGGTGTCAGGAAAGAACCCTTAATAGCAT
GGTTGTTTCCTGCAGAGCTCTACTCGATGTGACCTTTGTCCCACTACCTG
TTTGATATTTTTGTTGTCGATGTGCAGAACAGCAACGTAACAATTCAAAG
GAGTAAGAGGACTCATTATGATTTGGTAGTTAGATGCCAAAACAACAACA
ACAAAATCTGTTGGACCCCAGTGCTATAATGTTGACATGTGAATGGTTGA
ATATACTCTGATCAAGCACGAAGCCCCACAGCGTACATAGTATTAGTAGC
TTGCATTAGAAACATTCTTCAAGTTTGCTGGAGCACACGCAGAAAACGGG
AAAACGTTCACTCCAAATCACGCCTGGCAAATTGCTTTCATTGAAGGAGC
TAGGGATGTGGCTTTAAAGAAGGTCTAGTGGACGTCTCAGAGTTTCAGGT
GTTTCGGGGTTCTTTGTCCTGTTACTTCAAGCCCTCCTGGTGAGAAATAT
AATTAAGGGAAGATGAATTGAACCCCTCCTGTGATAACAAAGGAAAGGTT
CTCTGAATACCTCTAAAAAACAATCGGGAGAAAAGTTCCTAAAATATCGA
ACTTCTCCCCCTGAGACTTTTAAGGGGGGAACGCCTTTAATAATGCCGGC
TTTTGTTTTTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_d23.g1 MSMg01no385_d23.g1 CHROMAT_FILE:
MSMg01no385_d23.g1 PHD_FILE: MSMg01no385_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:46 2005
         (487 letters)



>mm_chr15_95057733_95058619
          Length = 887

 Score =  897 bits (464), Expect = 0.0
 Identities = 479/484 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   cctctggaagacactcttaccaggagtcagggtacaacgctgtctatacagcactgggtg 63
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 204 cctctggaagacactcttaccaggagtcagggtacaacgctgtctatacagcaccgggtg 263

                                                                       
Query: 64  tcaggaaagaacccttaatagcatggttgtttcctgcagagctctactcgatgtgacctt 123
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcaggaaagagcccttaatagcatggttgtttcctgcagagctctactcgatgtgacctt 323

                                                                       
Query: 124 tgtcccactacctgtttgatatttttgttgtcgatgtgcagaacagcaacgtaacaattc 183
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 324 tgtcccactacctgtttgatatttttattgtcgatgtgcagaacagcaacgtaacaattc 383

                                                                       
Query: 184 aaaggagtaagaggactcattatgatttggtagttagatgccaaaacaacaacaacaaaa 243
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaaggagtaagaggactcattattatttggtagttagatgccaaaacaacaacaacaaaa 443

                                                                       
Query: 244 tctgttggaccccagtgctataatgttgacatgtgaatggttgaatatactctgatcaag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctgttggaccccagtgctataatgttgacatgtgaatggttgaatatactctgatcaag 503

                                                                       
Query: 304 cacgaagccccacagcgtacatagtattagtagcttgcattagaaacattcttcaagttt 363
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cacgaagccacacagcgtacatagtattagtagcttgcattagaaacattcttcaagttt 563

                                                                       
Query: 364 gctggagcacacgcagaaaacgggaaaacgttcactccaaatcacgcctggcaaattgct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gctggagcacacgcagaaaacgggaaaacgttcactccaaatcacgcctggcaaattgct 623

                                                                       
Query: 424 ttcattgaaggagctagggatgtggctttaaagaaggtctagtggacgtctcagagtttc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttcattgaaggagctagggatgtggctttaaagaaggtctagtggacgtctcagagtttc 683

               
Query: 484 aggt 487
           ||||
Sbjct: 684 aggt 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)