Query= MSMg01no386_o03.b1 MSMg01no386_o03.b1 CHROMAT_FILE:
MSMg01no386_o03.b1 PHD_FILE: MSMg01no386_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:47 2005
(692 letters)
>mm_chr15_92866471_92867563
Length = 1093
Score = 1301 bits (673), Expect = 0.0
Identities = 684/688 (99%), Gaps = 1/688 (0%)
Strand = Plus / Plus
Query: 5 gaattctctacccta-cccatcttagggcgatggttgggtcacatcttcaagacacacct 63
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctacccaaacccatcttagggcgatggttgggtcacatcttcaagacacacct 264
Query: 64 ggggaacacacctctgctaaaagagaggcattcttgggagggtgagggggaatcttacag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggggaacacacctctgctaaaagagaggcattcttgggagggtgagggggaatcttacag 324
Query: 124 gcccacagaaggcaaaaatcaagtgaagccagagaggttcctaatacacaaagaagggaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcccacagaaggcaaaaatcaagtgaagccagagaggttcctaatacacaaagaagggaa 384
Query: 184 gagtgagctatgaaaagagctctggctgacagcagacgtttggataccccaaagtcaaag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagtgagctatgaaaagagctctggctgacagcagacgtttggataccccaaagtcaaag 444
Query: 244 ctggcataagccaaaggtgaggcgagagtctgaagtcaacagagcctcgcccagatatgt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctggcataagccaaaggtgaggcgagagtctgaagtcaacagagcctcgcccagatatgt 504
Query: 304 aactagtttaacagcgccctgttttgaagacccagaaaccacacctctttctttccttta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aactagtttaacagcgccctgttttgaagacccagaaaccacacctctttctttccttta 564
Query: 364 tttccgtgtaattgattcttagaggccatcactatgagtctgtgatactgtggcttttaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttccgtgtaattgattcttagaggccatcactatgagtctgtgatactgtggcttttaa 624
Query: 424 ttgttaatgttgctatcttttgatttgtctgcatattttggcctaaagtttcgtggtttt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgttaatgttgctatcttttgatttgtctgcatattttggcctaaagtttcgtggtttt 684
Query: 484 ccatttttttaaattctacttcatcttaagttatgtgtgtgctcgtgtgagttttgactt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccatttttttaaattctacttcatcttaagttatgtgtgtgctcgtgtgagttttgactt 744
Query: 544 tatagaactctcttcagtaggattgctactcttggttctgtgaccactggttgtggattt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tatagaactctcttcagtaggattgctactcttggttctgtgaccactggttgtggattt 804
Query: 604 gtgggctgtaatagattttgtgtgcatttttaaattcactgtatatccttccagnccacc 663
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 805 gtgggctgtaatagattttgtgtgcatttttaaattcactttatatccttccagtccacc 864
Query: 664 cctcccccatgcccccatcccttctcct 691
||||||||||||||||||||||||||||
Sbjct: 865 cctcccccatgcccccatcccttctcct 892
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1093
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1083
Effective search space: 738606
Effective search space used: 738606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_o03.g1 MSMg01no386_o03.g1 CHROMAT_FILE:
MSMg01no386_o03.g1 PHD_FILE: MSMg01no386_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:47 2005
(559 letters)
>mm_chr15_93059385_93060342
Length = 958
Score = 1002 bits (518), Expect = 0.0
Identities = 549/560 (98%), Gaps = 3/560 (0%)
Strand = Plus / Minus
Query: 1 ccaatgaggatagatgcagggacagtggcactcca-ggggggtggcaaggatcttgtggg 59
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 758 ccaatgaggatagatgcagggacagtggcaccccagggggggtggcaaggatcttgtggg 699
Query: 60 agcactcttccctagataagcactgcttaattaagaataattgaattgtagctcccgctc 119
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 698 agcactcttccctagataagcactgcctaattaagaataattgaattgtagctcccgctc 639
Query: 120 gtgaagctggtatcatttgtcttgttgatagtaactccagaacacacccacggtcgaatt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gtgaagctggtatcatttgtcttgttgatagtaactccagaacacacccacggtcgaatt 579
Query: 180 aattaactggcagttatcagaagagggaaatcagcttgtgaggagagctggtggagctga 239
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 578 aattaactggcagttatcagaagagggaaatcagcttgtgagaagagctggtggagctga 519
Query: 240 tagcatctctgagtgacacccttgctgctgtgtgatatgccattgaacgaacgattgacc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tagcatctctgagtgacacccttgctgctgtgtgatatgccattgaacgaacgattgacc 459
Query: 300 cacactgacccccctgtgtccaatgtattggcctcattcccgttgcgatcaggtagaagc 359
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 458 cacactgacccccctgtgtccaatgtattggcctcattcccgttttgatcacgtagaagc 399
Query: 360 aaaagagacaaaacctaccctgcccctgtatgacccagcacatcacatatgacaaccaga 419
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aaaagagacaa--cctaccctgcccctgtatgacccagcacatcacatatgacaaccaga 341
Query: 420 ggaaaccaaaagtaacaaggtcacccggaatggggtggcccctctagcggtaaacctcaa 479
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 340 ggaaaccaaaagtaacaaggtcacccggaatggggtgacccctctagcggtaaacctcaa 281
Query: 480 actgtttcctgtgaaccatattccaccttctgcttgtcacactgtgacggtatgctgcaa 539
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 280 actgtttcctgtgaaccatattccaccttctgcttgtcacactgtgaccgtatgctgcaa 221
Query: 540 cccttgtgagcatctccatc 559
||||||||||||||||||||
Sbjct: 220 cccttgtgagcatctccatc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 958
Length adjustment: 10
Effective length of query: 549
Effective length of database: 948
Effective search space: 520452
Effective search space used: 520452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
