BAC Information

Click to search

BAC

Clone NameMSMg01-387N21
Chromosome15 (Build37)
Map Location 88,092,698 - 88,266,809
singlet/doubletdoublet
Overlap genenone
Upstream geneAW049604, LOC100042329, LOC100042340
Downstream geneZdhhc25, Brd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387N21.T7 (MSMg01no387_n21.b1)MSMg01-387N21.TJ (MSMg01no387_n21.g1)
ACCAG490499AG490500
length786824
length of high quality
(start - end)		453 (42 - 494)408 (76 - 483)
definitionCHROMAT_FILE: MSMg01no387_n21.b1 PHD_FILE: MSMg01no387_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:03 2005CHROMAT_FILE: MSMg01no387_n21.g1 PHD_FILE: MSMg01no387_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,092,698 - 88,093,146)(88,266,402 - 88,266,809)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGACAGTGTTGGAGAGGAGAAAAGAGCAGGTGCAGGATACCCCTCACTC
ATCACCAGTTGCTCCCCTTGAGGCTCTCAGCTACTTCAATCCCCAACCTC
TTCCAAACCAAAGCAAAACCCTTCTAAATGTCAATGTTTAAACTCTCCTC
ATTGTTAAGGGTTTTATTAAGACACAGTTCCAAGATCCTAAGGCTCACCC
TTTGAGAGTATGGCTCAGAGGCTGTAACATAGTCACAGAGCTGTATACAG
CCATCGTCACATCTCTGCCCATCCCCACCCATGCCACTGTCATTTTGGCC
ATAGCAACAGCAGCTCCTGCAGGGTGGCAGCTCATGGGTTTGATTGGCAC
TTCTGATAGCTGATGACTATTTTTCTTTTCATATACTTACTACCAGTCAA
ATCTTTGCGTTAATGTCTATTGCGAGCCTCTGCCCATTTAATGATACCAC
ATGCCTTTGCTTAGCGAGTTCTTATTTTGTATATTCTACTTACCATTCCC
TACCCAATACCCAATTGCGAAACCCATCCTTCTCCTGGTAACTTTTTCGT
GTTTTACCAAATTTGATGCCGCCCCTTTGGAAAAACCGTGGCTGTGCCGG
CGCTGCAAACCTCAACGCGGAAAGGTAACCAATGTCTACAGTCTCTTTCC
CCCGCCTCCATTTTCTCCCTCCCCCCAATAAAGCGTTCTCTTTGGTTGCC
CCCTAACTCTCCCCTCCTCCTTTCTCCCTTTACTTN

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTAGTTAGAGAGAGCTACAATCCC
AGGTGAACTCAGTGCTTTCTTCCTATTTCCCTCCTCCTGGGGTCCACTCT
GCTCCTTTCTGCCTGCTGAGACATCACACCCACATATGCACATTAGATGG
AGGGTAAGAACCAAAGACCTAAGTCCTGGCTGTTACTTTAGAGGGAAGCT
GGAGAGAGACAAGACACTGCCTCTCTGCATCTACCCCATGAGGCACTCCC
TAGCACTTGTGGCTTGGTGGCTATGTTTACCTTCCAAATAGGGGACCATG
GGAGCCTGCCGCTTGTCTTTTCTCTAATCACCTGGCTGAATTTGCTTGCT
GTATAGATGAGGAAGCTGAACTGTGGGTTCCAGAAAGGTGCCCCAGCGAA
TGACAGCTGACAGAGTAGGGACACAGCTGGTCCCCAGNTTTCAGATTCCT
ATTTACCATTCCACCTGCTCCATGAATGGGCTGTGATCACTATGTATCCT
CTGGAAGCTCTGCCAATGTCCAAAGTTTTGTTTGAAAACCTTTTGCAAAG
GGTCCTTGGCCTAAGGATTGGTCCCTTACAAAAACAAGGGCCCAAAACCC
ACCCACATTAATCCCTAAGTCCCTGGGAAATATAGGGGGGGGGGTTTATT
TTTATCTTCATTCTTTTCTTCCTCTTCCTCTCCTCTACTCCACTATCTGN
CCTATCTCCGATTACTCTCGCCTTTCTTCTCATTATTTTCCTAGTCTCTC
CTTTTATGTTATTACATTCACATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_n21.b1 MSMg01no387_n21.b1 CHROMAT_FILE:
MSMg01no387_n21.b1 PHD_FILE: MSMg01no387_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:03 2005
         (453 letters)



>mm_chr15_88092494_88093346
          Length = 853

 Score =  814 bits (421), Expect = 0.0
 Identities = 442/449 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagacagtgttggagaggagaaaagagcaggtgcaggatacccctcactcatcac 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagacagtggtggagaggagaaaagagcaggtgcaggatacccctcactcatcac 264

                                                                       
Query: 65  cagttgctccccttgaggctctcagctacttcaatccccaacctcttccaaaccaaagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagttgctccccttgaggctctcagctacttcaatccccaacctcttccaaaccaaagca 324

                                                                       
Query: 125 aaacccttctaaatgtcaatgtttaaactctcctcattgttaagggttttattaagacac 184
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaacccttctaaatgtcaatgttaaaactctcctcattgttaagggttttattaagacac 384

                                                                       
Query: 185 agttccaagatcctaaggctcaccctttgagagtatggctcagaggctgtaacatagtca 244
           |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 385 agttccaagaccctaaggctcaccctttgagagtacggctcagaggctgtaacatagtca 444

                                                                       
Query: 245 cagagctgtatacagccatcgtcacatctctgcccatccccacccatgccactgtcattt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagagctgtatacagccatcgtcacatctctgcccatccccacccatgccactgtcattt 504

                                                                       
Query: 305 tggccatagcaacagcagctcctgcagggtggcagctcatgggtttgattggcacttctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggccatagcaacagcagctcctgcagggtggcagctcatgggtttgattggcacttctg 564

                                                                       
Query: 365 atagctgatgactatttttcttttcatatacttactaccagtcaaatctttgcgttaatg 424
           ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 565 atagccgatgactatttttcttttcatatacttactaccagtcaaatctttgagttaatg 624

                                        
Query: 425 tctattgcgagcctctgcccatttaatga 453
           ||||||| |||||||||||||||||||||
Sbjct: 625 tctattgggagcctctgcccatttaatga 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no387_n21.g1 MSMg01no387_n21.g1 CHROMAT_FILE:
MSMg01no387_n21.g1 PHD_FILE: MSMg01no387_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:03 2005
         (408 letters)



>mm_chr15_88266202_88267009
          Length = 808

 Score =  781 bits (404), Expect = 0.0
 Identities = 407/408 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctagttagagagagctacaatcccaggtgaactcagtgctttcttcctatttccctcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tctagttagagagagctacaatcccaggtgaactcagtgctttcttcctatttccctcct 549

                                                                       
Query: 61  cctggggtccactctgctcctttctgcctgctgagacatcacacccacatatgcacatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cctggggtccactctgctcctttctgcctgctgagacatcacacccacatatgcacatta 489

                                                                       
Query: 121 gatggagggtaagaaccaaagacctaagtcctggctgttactttagagggaagctggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gatggagggtaagaaccaaagacctaagtcctggctgttactttagagggaagctggaga 429

                                                                       
Query: 181 gagacaagacactgcctctctgcatctaccccatgaggcactccctagcacttgtggctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gagacaagacactgcctctctgcatctaccccatgaggcactccctagcacttgtggctt 369

                                                                       
Query: 241 ggtggctatgtttaccttccaaataggggaccatgggagcctgccgcttgtcttttctct 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggtggctatgtttacctttcaaataggggaccatgggagcctgccgcttgtcttttctct 309

                                                                       
Query: 301 aatcacctggctgaatttgcttgctgtatagatgaggaagctgaactgtgggttccagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aatcacctggctgaatttgcttgctgtatagatgaggaagctgaactgtgggttccagaa 249

                                                           
Query: 361 aggtgccccagcgaatgacagctgacagagtagggacacagctggtcc 408
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aggtgccccagcgaatgacagctgacagagtagggacacagctggtcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |