BAC Information

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BAC

Clone NameMSMg01-388E18
Chromosome15 (Build37)
Map Location 16,623,552 - 16,755,969
singlet/doubletdoublet
Overlap geneCdh9
Upstream geneEG239341, LOC100040087, LOC624183, LOC100040119
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388E18.T7 (MSMg01no388_e18.b1)MSMg01-388E18.TJ (MSMg01no388_e18.g1)
ACCAG490826AG490827
length773789
length of high quality
(start - end)		509 (37 - 545)440 (75 - 514)
definitionCHROMAT_FILE: MSMg01no388_e18.b1 PHD_FILE: MSMg01no388_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:36 2005CHROMAT_FILE: MSMg01no388_e18.g1 PHD_FILE: MSMg01no388_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,755,464 - 16,755,969)(16,623,552 - 16,623,991)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTT
GTATTAAAACTTAATCCTCAGGGCCCATGCAGGACATATGCCTTTAGGCC
ACATATCAGAGATCCAGTAAGTGACAAGACGAAAATTAGAACTAGCTAGT
CTGACTAAAGGTCAACAGTTCTCTGTGATTTTCCCAACAGACTGCTTAGT
TAGGTTTGTCTTCTTGATTCCATGGACAGTGAGCCTTTTTCAAAGAGTCT
CAATTGGCACAGGAAAGAATTAGAATGCTAGCTTGCAATTTTATGCTGTG
TGTAGGAACTGATAAGTTCTTTCTGAATACAGGTCAGATCATATTTATGA
ATTGCAAAAGACATGTTTATCAACCCCAAATATAACAAAATAGCAAGTAG
CCTGAAGGAGAATTAATACAAATATAGAAACTTAATATTTGACAAATATT
AAGAATTGAATCATTGAAGGTTTTTAAAATAACATTTAAAGGTATTTATT
TGCCTTTAAATTGTTTTATATTAAATAAATAATGATAAAATAAATGCTTA
TATTTAATATGAGAAAGAAAGCACCTGCCTTGAGCAGATATGTGGAAAGA
ATGTAATGGAATGATGGGATAGAACTCCTTAACTATTAAAGATATTTATC
CAAAAGAGTAGAGGGAGCCGATTCTGGTAGATTATCCGCTAAATGGATGG
GGAAACTCTTTTCCCAAAACCAAAAGGGGAATGATTGGCCTCAAATCAAA
TATCTGGTACCAAAAACCTCCTT

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCTCCTTTTTCTATTCCTATTATTC
TTAGGTTTTGTCTTTTCACAGGGTCTCAAATTTCCTAGCTATTTTGTGTC
ATGATTTTTTTCTTTAAGATTTGACAATTTCTTTGATTGATGTATCTATT
TCTTCTATTATATATTCAATGATGCCTGTGCTTTCCTCTTCCATCTGTTG
TATTTTGTTGGTGGAGTTTGTCTTTTTAGTACTTGGTCAAATTCCTAATT
TTTAGTGTTGAAAAACCCCATCACTAAATCCACCGTGCATAAGCCAGCAA
CAGGAGCTATGTTATCATCAGCCACCAAAATACAACACATTTACACTTTT
GCCATGAGCTCTATGTTCTCTGTATGGTCAGGCGCTGTACGCCTTTATAA
AAATCCTCTGCCATCACTCTCTGCCCTCTTTAGCCTTTTACCTTCACTCA
GAGTAAGCCTCTGTTTACCACCCCAATACACCTCTCACATGAGATCTCTT
GTCTGGTCTGATCTGTTTGTGGCACACCTTGCCAAGTTTCCTTTTTCCTT
TAATTCTGAGAAACCACGTTTTTATATTCTTTAAAGGCTCCGTTTAAGGC
CTCCACCCCTTGACAATTTTATTCCTTTCCTTTAGAGGAAATGGGTGAGG
ATTTTCTCGCTTTTTTTTAAAAAAATAAACACTTTCCCTCCCCGGTTATA
TAAGTGTTCCCCCCCCCCTTATTAGGTTTTATTATTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_e18.b1 MSMg01no388_e18.b1 CHROMAT_FILE:
MSMg01no388_e18.b1 PHD_FILE: MSMg01no388_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:36 2005
         (509 letters)



>mm_chr15_16755302_16756210
          Length = 909

 Score =  963 bits (498), Expect = 0.0
 Identities = 504/506 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatttgtattaaaacttaatcctcagggcccatgcaggacatatgcctttaggc 63
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 668 ggaattcatttgtattaaaacttaatcctcacggcccatgcaggacatatgcctttaggc 609

                                                                       
Query: 64  cacatatcagagatccagtaagtgacaagacgaaaattagaactagctagtctgactaaa 123
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 cacatatcggagatccagtaagtgacaagacgaaaattagaactagctagtctgactaaa 549

                                                                       
Query: 124 ggtcaacagttctctgtgattttcccaacagactgcttagttaggtttgtcttcttgatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ggtcaacagttctctgtgattttcccaacagactgcttagttaggtttgtcttcttgatt 489

                                                                       
Query: 184 ccatggacagtgagcctttttcaaagagtctcaattggcacaggaaagaattagaatgct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ccatggacagtgagcctttttcaaagagtctcaattggcacaggaaagaattagaatgct 429

                                                                       
Query: 244 agcttgcaattttatgctgtgtgtaggaactgataagttctttctgaatacaggtcagat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 agcttgcaattttatgctgtgtgtaggaactgataagttctttctgaatacaggtcagat 369

                                                                       
Query: 304 catatttatgaattgcaaaagacatgtttatcaaccccaaatataacaaaatagcaagta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 catatttatgaattgcaaaagacatgtttatcaaccccaaatataacaaaatagcaagta 309

                                                                       
Query: 364 gcctgaaggagaattaatacaaatatagaaacttaatatttgacaaatattaagaattga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcctgaaggagaattaatacaaatatagaaacttaatatttgacaaatattaagaattga 249

                                                                       
Query: 424 atcattgaaggtttttaaaataacatttaaaggtatttatttgcctttaaattgttttat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 atcattgaaggtttttaaaataacatttaaaggtatttatttgcctttaaattgttttat 189

                                     
Query: 484 attaaataaataatgataaaataaat 509
           ||||||||||||||||||||||||||
Sbjct: 188 attaaataaataatgataaaataaat 163


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no388_e18.g1 MSMg01no388_e18.g1 CHROMAT_FILE:
MSMg01no388_e18.g1 PHD_FILE: MSMg01no388_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:36 2005
         (440 letters)



>mm_chr15_16623352_16624191
          Length = 840

 Score =  828 bits (428), Expect = 0.0
 Identities = 437/440 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctcctttttctattcctattattcttaggttttgtcttttcacagggtctcaaatttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctcctttttctattcctattattcttaggttttgtcttttcacagggtctcaaatttc 260

                                                                       
Query: 61  ctagctattttgtgtcatgatttttttctttaagatttgacaatttctttgattgatgta 120
           |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 261 ctagctattttgtgtcatgatttttttctttaagatttgacattttctttgactgatgta 320

                                                                       
Query: 121 tctatttcttctattatatattcaatgatgcctgtgctttcctcttccatctgttgtatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctatttcttctattatatattcaatgatgcctgtgctttcctcttccatctgttgtatt 380

                                                                       
Query: 181 ttgttggtggagtttgtctttttagtacttggtcaaattcctaatttttagtgttgaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgttggtggagtttgtctttttagtacttggtcaaattcctaatttttagtgttgaaaa 440

                                                                       
Query: 241 accccatcactaaatccaccgtgcataagccagcaacaggagctatgttatcatcagcca 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accccagcactaaatccaccgtgcataagccagcaacaggagctatgttatcatcagcca 500

                                                                       
Query: 301 ccaaaatacaacacatttacacttttgccatgagctctatgttctctgtatggtcaggcg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccaaaatacaacacatttacacttttgccatgagctctatgttctctgtatggtcaggcg 560

                                                                       
Query: 361 ctgtacgcctttataaaaatcctctgccatcactctctgccctctttagccttttacctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgtacgcctttataaaaatcctctgccatcactctctgccctctttagccttttacctt 620

                               
Query: 421 cactcagagtaagcctctgt 440
           ||||||||||||||||||||
Sbjct: 621 cactcagagtaagcctctgt 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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